Evidence map›Paper›PMID 36208449›Full record

ArticleSTAR protocols2022

Target-switch SELEX: Screening with alternating targets to generate aptamers to conserved terminal dipeptides.

Zachary William Cutts, Jessica M Hong, Shirley Shao, Alexander Tran, Michelle Dimon, Marc Berndl, Diana Wu, Annalisa Pawlosky

Abstract read
In one paragraph

Article in STAR protocols, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zachary William CuttsGoogle, LLC, Mountain View, CA 94043, USA.
Jessica M HongGoogle, LLC, Mountain View, CA 94043, USA.
Shirley ShaoGoogle, LLC, Mountain View, CA 94043, USA.
Alexander TranGoogle, LLC, Mountain View, CA 94043, USA.
Michelle DimonGoogle, LLC, Mountain View, CA 94043, USA.
Marc BerndlGoogle, LLC, Mountain View, CA 94043, USA.
Diana WuGoogle, LLC, Mountain View, CA 94043, USA. Electronic address: wu.diana@gene.com.
Annalisa PawloskyGoogle, LLC, Mountain View, CA 94043, USA. Electronic address: apawlosky@google.com.

Funding

BMI Bioinformatics Training GrantsT32GM067547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, RYAN D. · 2003 to 2022
$6.6M
NIGMS NIH HHS T32 GM067547
6 · The paper itself

Abstract

Systematic evolution of ligands by exponential enrichment (SELEX) encompasses a wide variety of high-throughput screening techniques for producing nucleic acid binders to molecular targets through directed evolution. We describe here the design and selection steps for discovery of DNA aptamers with specificity for the two consecutive N-terminal amino acids (AAs) of a small peptide (8-10 amino acids). This bead-based method may be adapted for applications requiring binders which recognize a specific portion of the desired target. For complete details on the use and execution of this protocol, please refer to Hong et al. (2022).

Indexed as

Aptamers, NucleotideSELEX Aptamer TechniqueDipeptidesHigh-Throughput Screening AssaysLigandsAptamers, NucleotideDipeptidesLigandsHigh throughput screeningMolecular/Chemical probes

Identifiers

PMID36208449
PMCPMC9557731

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.