ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2023
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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46 citing papers in PubMed, 71 citations in OpenAlex.
- Decoding the autotetraploid origin of the stress-tolerant wild beet Beta corolliflora.BMC genomics · 2026Article
- Identification of a candidate self-incompatibility locus in beet (Beta vulgaris).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Twenty-one years of three-way hybrid breeding shaped diversity and complementarity of male and female gene pools in sugar beet.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Revisiting the Molecular Roadmap for Sugar Crops: Genome Reading, Trait Writing and Variety Redesigning.Plant biotechnology journal · 2026Review
- Article
- Genome evolution and regulatory dynamics underlying salt stress tolerance in the halophyte Halogeton arachnoideus.Communications biology · 2026Article
- Subcellular localization and differential expression provide insights into the putative function of the nematode resistance gene Hs4.Scientific reports · 2026Article
- Combined transcriptome and metabolome analysis reveals nitrogen-responsive genes and metabolites in sugar beet (Frontiers in plant science · 2026Article
- Next-generation CRISPR systems and advanced delivery paradigms for precision crop improvement: a comparative case study in sugar beet (Frontiers in plant science · 2026Review
- Sustaining Edible Grass (Antioxidants (Basel, Switzerland) · 2025Article
- Miniature inverted repeat transposable elements in the genome of sugar beet and their impact on gene expression.Scientific reports · 2025Article
- Sugar beet long-read reference assembly of genotype KWS2320.NAR genomics and bioinformatics · 2025Article
- Domestication shaped the chromatin landscape of grain amaranth.Nature communications · 2025Article
- Analyses of contiguous reference genomes of Amaranthus tuberculatus highlight the landscape of the sex-associated region and PEBP gene family diversity.BMC genomics · 2025Article
- Phenotypic, genetic, and population structure analysis offer insights into the genetic architecture of root shape inHorticulture research · 2025Article
- Transcriptomic responses of beet to infection by beet mild yellowing virus.BMC plant biology · 2025Article
- Advances in Cytoplasmic Male Sterility in Sugar Beet from Mitochondrial Genome Structural Dynamics and Nuclear-Cytoplasmic Coordination.International journal of molecular sciences · 2025Review
- The genome of Chenopodium ficifolium: developing genetic resources and a diploid model system for allotetraploid quinoa.G3 (Bethesda, Md.) · 2025Article
- Signatures in domesticated beet genomes pointing at genes under selection in a sucrose-storing root crop.BMC biology · 2025Article
- Uracil-DNA Glycosylase fromInternational journal of molecular sciences · 2025Article
Corrections and comments
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Authors and funding
29 authors at 9 institutions in 4 countries.
Funding
Abstract
A contiguous assembly of the inbred 'EL10' sugar beet (Beta vulgaris ssp. vulgaris) genome was constructed using PacBio long-read sequencing, BioNano optical mapping, Hi-C scaffolding, and Illumina short-read error correction. The EL10.1 assembly was 540 Mb, of which 96.2% was contained in nine chromosome-sized pseudomolecules with lengths from 52 to 65 Mb, and 31 contigs with a median size of 282 kb that remained unassembled. Gene annotation incorporating RNA-seq data and curated sequences via the MAKER annotation pipeline generated 24,255 gene models. Results indicated that the EL10.1 genome assembly is a contiguous genome assembly highly congruent with the published sugar beet reference genome. Gross duplicate gene analyses of EL10.1 revealed little large-scale intra-genome duplication. Reduced gene copy number for well-annotated gene families relative to other core eudicots was observed, especially for transcription factors. Variation in genome size in B. vulgaris was investigated by flow cytometry among 50 individuals producing estimates from 633 to 875 Mb/1C. Read-depth mapping with short-read whole-genome sequences from other sugar beet germplasm suggested that relatively few regions of the sugar beet genome appeared associated with high-copy number variation.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.