ArticleDatabase : the journal of biological databases and curation2022
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Article in Database : the journal of biological databases and curation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
33 citing papers in PubMed.
- Developing a Specialized Dravet Syndrome Ontology for Rare Disease Informatics and AI Applications.medRxiv : the preprint server for health sciences · 2026Article
- The Cell Ontology in the age of single-cell omics.Scientific data · 2026Article
- Mondo: integrating disease terminology across communities.Genetics · 2026Article
- Dragon Kill Points: applying a transparent working template to relieve authorship stress.BMC biology · 2026Review
- Artificial Intelligence-Powered Raman Spectroscopy through Open Science and FAIR Principles.ACS nano · 2025Review
- Chemical classification program synthesis using generative artificial intelligence.Journal of cheminformatics · 2025Article
- Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery.Disease models & mechanisms · 2025Article
- Towards a new vision of PaNET: enhancing reasoning capabilities for better photon and neutron data discovery.Journal of synchrotron radiation · 2025Article
- Digital evolution: Novo Nordisk's shift to ontology-based data management.Journal of biomedical semantics · 2025Article
- The Unified Phenotype Ontology : a framework for cross-species integrative phenomics.Genetics · 2025Article
- Defining the concept of physical resilience and quantifying recovery during standing balance in middle-aged and older adults.Scientific reports · 2025Article
- Navigating open-source waters: the pharmaceutical industry's role in bioontology development.Database : the journal of biological databases and curation · 2025Article
- Linking behaviour change techniques to mechanisms of action: Using the Theory and Techniques Tool alongside the Behaviour Change Intervention Ontology.Wellcome open research · 2025Article
- Core reference ontology for individualized exercise prescription.Scientific data · 2024Article
- Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).Journal of biomedical semantics · 2024Article
- The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics.bioRxiv : the preprint server for biology · 2024Article
- MRIO: the Magnetic Resonance Imaging Acquisition and Analysis Ontology.Neuroinformatics · 2024Article
- Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis.Journal of biomedical semantics · 2024Article
- The O3 guidelines: open data, open code, and open infrastructure for sustainable curated scientific resources.Scientific data · 2024Article
- Review
Corrections and comments
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Authors and funding
27 authors.
Funding
Abstract
Similar to managing software packages, managing the ontology life cycle involves multiple complex workflows such as preparing releases, continuous quality control checking and dependency management. To manage these processes, a diverse set of tools is required, from command-line utilities to powerful ontology-engineering environmentsr. Particularly in the biomedical domain, which has developed a set of highly diverse yet inter-dependent ontologies, standardizing release practices and metadata and establishing shared quality standards are crucial to enable interoperability. The Ontology Development Kit (ODK) provides a set of standardized, customizable and automatically executable workflows, and packages all required tooling in a single Docker image. In this paper, we provide an overview of how the ODK works, show how it is used in practice and describe how we envision it driving standardization efforts in our community. Database URL: https://github.com/INCATools/ontology-development-kit.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.