Evidence map›Paper›PMID 36207729›Full record

ArticleVirology journal2022

Whole-genome analysis of human papillomavirus 67 isolated from Japanese women with cervical lesions.

Gota Kogure, Mamiko Onuki, Yusuke Hirose, Mayuko Yamaguchi-Naka, Seiichiro Mori, Takashi Iwata, Kazunari Kondo, Akihiko Sekizawa, Koji Matsumoto, Iwao Kukimoto

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Gota KogurePathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Mamiko OnukiDepartment of Obstetrics and Gynecology, Showa University School of Medicine, Tokyo, Japan.
Yusuke HiroseDepartment of Obstetrics and Gynecology, Showa University School of Medicine, Tokyo, Japan.
Mayuko Yamaguchi-NakaDepartment of Obstetrics and Gynecology, Showa University School of Medicine, Tokyo, Japan.
Seiichiro MoriPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Takashi IwataDepartment of Obstetrics and Gynecology, Keio University School of Medicine, Tokyo, Japan.
Kazunari KondoDepartment of Obstetrics and Gynecology, NTT Medical Center Tokyo, Tokyo, Japan.
Akihiko SekizawaDepartment of Obstetrics and Gynecology, Showa University School of Medicine, Tokyo, Japan.
Koji MatsumotoDepartment of Obstetrics and Gynecology, Showa University School of Medicine, Tokyo, Japan.
Iwao KukimotoPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan. ikuki@niid.go.jp.
Showa University · JPNational Institute of Infectious Diseases · JPKeio University · JPNTT Medical Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHuman papillomavirus (HPV) type 67 is phylogenetically classified into Alphapapillomavirus species 9 (alpha-9) together with other carcinogenic types (HPV16, 31, 33, 35, 52 and 58), but is the only alpha-9 type defined as possibly carcinogenic. This study aimed to determine whole-genome sequences of HPV67 isolated from Japanese women with cervical cancer or cervical intraepithelial neoplasia (CIN) to better understand the genetic basis of the oncogenic potential of HPV67.

methodsTotal cellular DNA isolated from cervical exfoliated cells that were single positive for HPV67 (invasive cervical cancer, n = 2; CIN3, n = 6; CIN 2, n = 1; CIN1, n = 2; the normal cervix, n = 1) was subjected to PCR to amplify HPV67 DNA, followed by next generation sequencing to determine the complete viral genome sequences. Variant lineages/sublineages were assigned through viral whole-genome phylogenetic analysis. The transcriptional activity of the virus early promoter was assessed by luciferase reporter assays in cervical cancer cell lines.

resultsPhylogenetic analyses of HPV67 genomes from Japan (n = 12) revealed that 11 belonged to lineage A (sublineage A1, n = 9; sublineage A2, n = 2) and one belonged to lineage B. All cancer cases contained sublineage A1 variants, and one of these contained an in-frame deletion in the E2 gene. The long control region of the HPV67 genome did not induce transcription from the virus early promoter in HeLa cells, but showed weak transcriptional activity in CaSki cells.

conclusionsThe single detection of HPV67 in cervical cancer and precancer specimens strongly suggests the carcinogenic potential of this rare genotype. The phylogenetic analysis indicates a predominance of lineage A variants among HPV67 infections in Japan. Since only 23 complete genome sequences of HPV67 had been obtained until now, the newly determined genome sequences in this study are expected to contribute to further functional and evolutionary studies on the genetic diversity of HPV67.

Indexed as

Papillomavirus InfectionsUterine Cervical DysplasiaUterine Cervical NeoplasmsDNA, ViralFemaleHeLa CellsHuman papillomavirus 16HumansJapanPapillomaviridaePhylogenyDNA, ViralCervical cancerHuman papillomavirusLong control regionType 67Variant

Identifiers

PMID36207729
PMCPMC9547447
OpenAlexW4303453942

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.