Evidence map›Paper›PMID 36207673›Full record

ArticleBMC genomics2022

PMEL p.Leu18del dilutes coat color of Kumamoto sub-breed of Japanese Brown cattle.

Satoshi Kimura, Touko Hatakeyama, Takashi Koutaka, Kazuhiro Kubo, Satoru Morita, Keiko Eguchi, Kohji Saitoh, Kenji Yamauchi, Saki Imai, Atsushi Kashimura and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Satoshi KimuraCourse of Agricultural Science, Graduate School of Agriculture, Tokai University, Kumamoto, Japan.
Touko HatakeyamaDepartment of Animal Science, School of Agriculture, Tokai University, Kumamoto, Japan.
Takashi KoutakaKumamoto Office, Phoenix College, Tokai University, Kumamoto, Japan.
Kazuhiro KuboKumamoto Office, Phoenix College, Tokai University, Kumamoto, Japan.
Satoru MoritaKumamoto Prefectural Agricultural University, Kumamoto, Japan.
Keiko EguchiKumamoto Prefectural Agricultural Research Center, Kumamoto, Japan.
Kohji SaitohKumamoto Prefectural Agricultural Research Center, Kumamoto, Japan.
Kenji YamauchiKumamoto Station, National Livestock Breeding Center, Kumamoto, Japan.
Saki ImaiDepartment of Animal Science, School of Agriculture, Tokai University, Kumamoto, Japan.
Atsushi KashimuraCourse of Agricultural Science, Graduate School of Agriculture, Tokai University, Kumamoto, Japan.
Toshiaki InenagaDepartment of Animal Science, School of Agriculture, Tokai University, Kumamoto, Japan.
Hirokazu MatsumotoCourse of Agricultural Science, Graduate School of Agriculture, Tokai University, Kumamoto, Japan. yamato@tsc.u-tokai.ac.jp.
Kyushu Tokai University · JPNational Livestock Breeding Center · JPPrefectural University of Kumamoto · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCoat color is important for registration and maintenance of livestock. Standard coat color of Kumamoto sub-breed of Japanese Brown cattle is solid brown, but individuals with diluted coat color have been observed recently. In this study, we attempted to identify polymorphism(s) responsible for coat color dilution by whole genome analysis.

resultsOne of the diluted cattle possessed 7302 exonic polymorphisms which could affect genes' function. Among them, 14 polymorphisms in 10 coat color-related genes were assumed to be specific for the diluted cattle. Subsequent genotyping with three diluted cattle and 74 standard cattle elucidated that PMEL p.Leu18del was the causative polymorphism for coat color dilution in this sub-breed. Individuals with del/del type of this polymorphism showed diluted coat color, but coat color of heterozygotes were intermediate with various dilution rates.

conclusionsCoat color dilution of Kumamoto sub-breed was caused by PMEL p.Leu18del. The causative del allele has been detected in several genetically distant cattle breeds, suggesting that PMEL p.Leu18del can be used as a DNA marker to control cattle coat color.

Indexed as

Hair ColorPolymorphism, Single NucleotideAllelesAnimalsCattleExonsGenetic MarkersPhenotypeGenetic MarkersCoat color dilutionDNA markerJapanese Brown cattleKumamoto prefecturePMELWhole genome analysis

Identifiers

PMID36207673
PMCPMC9541072
OpenAlexW4303615198

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.