Evidence map›Paper›PMID 36206766›Full record

ArticleMolecular cell2022

Calcineurin dephosphorylates topoisomerase IIβ and regulates the formation of neuronal-activity-induced DNA breaks.

Ilse Delint-Ramirez, Lahiri Konada, Lance Heady, Richard Rueda, Alvaro Sebastian Vaca Jacome, Eric Marlin, Charlotte Marchioni, Amir Segev, Oleg Kritskiy, Satoko Yamakawa and 3 more

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. DNA topological regulation in RNA polymerase II transcription.Cellular & molecular biology letters · 2026
    Review
  4. The Roles of Topoisomerases in Transcriptional Regulation.International journal of molecular sciences · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Loss of Adaptive DNA Breaks in Alzheimer's Disease Brains.Journal of Alzheimer's disease : JAD · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Ilse Delint-RamirezDepartments of Psychiatry, Neuroscience, and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Lahiri KonadaDepartments of Psychiatry, Neuroscience, and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Lance HeadyDepartments of Psychiatry, Neuroscience, and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Richard RuedaDepartments of Psychiatry, Neuroscience, and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Alvaro Sebastian Vaca JacomeBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Eric MarlinDepartments of Psychiatry, Neuroscience, and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Charlotte MarchioniDepartments of Psychiatry, Neuroscience, and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Amir SegevDepartments of Psychiatry, Neuroscience, and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Oleg KritskiyPicower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Satoko YamakawaPicower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Andrew H ReiterBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Li-Huei TsaiPicower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA; Broad Institute of MIT and Harvard, Cambridge, MA, USA. Electronic address: lhtsai@mit.edu.
Ram MadabhushiDepartments of Psychiatry, Neuroscience, and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA. Electronic address: ram.madabhushi@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USBroad Institute · USMassachusetts Institute of Technology · USSouthwestern Medical Center · US

Funding

The Cdk5/p35 KinaseR01NS051874 · NINDS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI TSAI, LI-HUEI · 2006 to 2015
$3.7M
The Cdk5/35 KinaseR37NS051874 · NINDS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI TSAI, LI-HUEI · 2016 to 2022
$3.2M
The impact of stress-induced DNA breaks on chromatin structure, gene activity, and neuron functionR01MH130399 · NIMH · UNIVERSITY OF CINCINNATI · PI Ram Madabhushi, Eric S Wohleb · 2023 to 2026
$3.2M
Mechanisms regulating the formation and repair of neuronal activity-induced DNA breaks in vivo and their effects on chromatin architecture and neuronal physiologyR01MH120132 · NIMH · UT SOUTHWESTERN MEDICAL CENTER · PI Ram Madabhushi · 2019 to 2026
$3.2M
Mechanisms underlying DNA double strand break response in Alzheimer?s disease and frontal temporal dementiaR01NS102730 · NINDS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI TSAI, LI-HUEI · 2017 to 2021
$2.1M
NIMH NIH HHS R01 MH120132NIMH NIH HHS R01 MH130399NINDS NIH HHS R01 NS051874NINDS NIH HHS R01 NS102730NINDS NIH HHS R37 NS051874
6 · The paper itself

Abstract

Neuronal activity induces topoisomerase IIβ (Top2B) to generate DNA double-strand breaks (DSBs) within the promoters of neuronal early response genes (ERGs) and facilitate their transcription, and yet, the mechanisms that control Top2B-mediated DSB formation are unknown. Here, we report that stimulus-dependent calcium influx through NMDA receptors activates the phosphatase calcineurin to dephosphorylate Top2B at residues S1509 and S1511, which stimulates its DNA cleavage activity and induces it to form DSBs. Exposing mice to a fear conditioning paradigm also triggers Top2B dephosphorylation at S1509 and S1511 in the hippocampus, indicating that calcineurin also regulates Top2B-mediated DSB formation following physiological neuronal activity. Furthermore, calcineurin-Top2B interactions following neuronal activity and sites that incur activity-induced DSBs are preferentially localized at the nuclear periphery in neurons. Together, these results reveal how radial gene positioning and the compartmentalization of activity-dependent signaling govern the position and timing of activity-induced DSBs and regulate gene expression patterns in neurons.

Indexed as

CalcineurinDNA Breaks, Double-StrandedDNA Topoisomerases, Type IINeuronsAnimalsCalciumDNADNA-Binding ProteinsMiceReceptors, N-Methyl-D-AspartateCalcineurinCalciumDNADNA-Binding ProteinsDNA Topoisomerases, Type IIReceptors, N-Methyl-D-Aspartateactivity-induced DNA breakscalcineurinearly response genesnuclear peripheryTop2B

Identifiers

PMID36206766
PMCPMC9990814
OpenAlexW4302424738

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.