Evidence map›Paper›PMID 36205932›Full record

ArticleCirculation. Genomic and precision medicine2022

Investigation of Copy Number Variation in South African Patients With Congenital Heart Defects.

Nicole A Saacks, James Eales, Timothy F Spracklen, Thomas Aldersley, Paul Human, Mark Verryn, John Lawrenson, Blanche Cupido, George Comitis, Rik De Decker and 8 more

Abstract read
In one paragraph

Article in Circulation. Genomic and precision medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Nicole A SaacksDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).ORCID 0000-0001-9032-7282
James EalesDivision of Cardiovascular Sciences, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, United Kingdom (J.E., B.D.K.).ORCID 0000-0001-6238-5952
Timothy F SpracklenDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).ORCID 0000-0002-7919-6848
Thomas AldersleyDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).ORCID 0000-0002-8911-8771
Paul HumanChris Barnard Division of Cardiothoracic Surgery, Department of Medicine, Faculty of Health Sciences (P.H., A.B.).ORCID 0000-0002-6007-5827
Mark VerrynCardiovascular Genetics Laboratory, Hatter Institute for Cardiovascular Research in Africa (M.V., G.S.).ORCID 0000-0002-2624-1043
John LawrensonDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).ORCID 0000-0002-2192-171X
Blanche CupidoDivision of Cardiology, Department of Medicine, Groote Schuur Hospital, Faculty of Health Sciences (B.C., L.J.Z.).ORCID 0000-0002-6263-7192
George ComitisDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).
Rik De DeckerDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).ORCID 0000-0002-3968-8805
Barend FourieDivision of Pediatric Cardiology, Department of Pediatrics and Child Health, University of Stellenbosch, Cape Town, South Africa (J.L., B.F.).
Lenise SwansonDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).
Alexia JoachimDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).ORCID 0000-0001-5251-5688
Andre BrooksChris Barnard Division of Cardiothoracic Surgery, Department of Medicine, Faculty of Health Sciences (P.H., A.B.).ORCID 0000-0002-6034-6105
Raj RamesarMRC Genomic & Precision Medicine Research Unit, Division of Human Genetics, Dept of Pathology, Institute for Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa (R.R.).ORCID 0000-0001-5688-1634
Gasnat ShaboodienDepartment of Medicine, Cape Heart Institute (T.F.S., G.S., L.J.Z.).ORCID 0000-0002-4217-1487
Bernard D KeavneyDivision of Cardiovascular Sciences, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, United Kingdom (J.E., B.D.K.).ORCID 0000-0001-9573-0812
Liesl J ZühlkeDivision of Pediatric Cardiology, Department of Pediatrics and Child Health (N.A.S., T.F.S., T.A., J.L., G.C., R.D.D., L.S., A.J., L.J.Z.).

Funding

British Heart Foundation CH/13/2/30154British Heart Foundation RG/15/12/31616British Heart Foundation RG15/12/31616British Heart Foundation RG/F/21/110050Medical Research Council MR/P025463/1Medical Research Council MR/S005242/1
6 · The paper itself

Abstract

backgroundCongenital heart disease (CHD) is a leading non-infectious cause of pediatric morbidity and mortality worldwide. Although the etiology of CHD is poorly understood, genetic factors including copy number variants (CNVs) contribute to the risk of CHD in individuals of European ancestry. The presence of rare CNVs in African CHD populations is unknown. This study aimed to identify pathogenic and likely pathogenic CNVs in South African patients with CHD.

methodsGenotyping was performed on 90 patients with nonsyndromic CHD using the Affymetrix CytoScan HD platform. These data were used to identify large, rare CNVs in known CHD-associated genes and candidate genes.

resultsWe identified eight CNVs overlapping known CHD-associated genes (

conclusionsIn this study, we show that chromosomal microarray is an effective technique for identifying CNVs in African patients diagnosed with CHD and have demonstrated results similar to previous CHD genetic studies in Europeans. Novel potential CHD genes were also identified, indicating the value of genetic studies of CHD in ancestrally diverse populations.

Indexed as

F-Box ProteinsFollistatin-Related ProteinsHeart Defects, CongenitalMicroRNAsDNA Copy Number VariationsHumansJumonji Domain-Containing Histone DemethylasesRNA-Binding ProteinsSouth AfricaF-Box ProteinsFollistatin-Related ProteinsFSTL1 protein, humanJumonji Domain-Containing Histone DemethylasesKDM2A protein, humanMicroRNAsRNA-Binding ProteinsAfrica, southernchromosomal abberationsDNA copy number variationsgeneticsheart defects, congenital

Identifiers

PMID36205932
PMCPMC9770125

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.