Evidence map›Paper›PMID 36204821›Full record

ReviewPlant biotechnology journal2023

Spatial proteomics of vesicular trafficking: coupling mass spectrometry and imaging approaches in membrane biology.

Liang Zhang, Xinlin Liang, Tomáš Takáč, George Komis, Xiaojuan Li, Yuan Zhang, Miroslav Ovečka, Yanmei Chen, Jozef Šamaj

Abstract readReview
In one paragraph

Review in Plant biotechnology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Liang ZhangState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.
Xinlin LiangState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.
Tomáš TakáčDepartment of Biotechnology, Faculty of Science, Palacky University Olomouc, Olomouc, Czech Republic.
George KomisDepartment of Cell Biology, Centre of the Region Hana for Biotechnological and Agricultural Research, Faculty of Science, Palacky University Olomouc, Olomouc, Czech Republic.
Xiaojuan LiCollege of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.ORCID 0000-0002-9955-2467
Yuan ZhangCollege of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.
Miroslav OvečkaDepartment of Biotechnology, Faculty of Science, Palacky University Olomouc, Olomouc, Czech Republic.
Yanmei ChenState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.ORCID 0000-0002-3910-3555
Jozef ŠamajDepartment of Biotechnology, Faculty of Science, Palacky University Olomouc, Olomouc, Czech Republic.ORCID 0000-0003-4750-2123

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, membrane compartmentalization requires vesicle trafficking for communication among distinct organelles. Membrane proteins involved in vesicle trafficking are highly dynamic and can respond rapidly to changes in the environment and to cellular signals. Capturing their localization and dynamics is thus essential for understanding the mechanisms underlying vesicular trafficking pathways. Quantitative mass spectrometry and imaging approaches allow a system-wide dissection of the vesicular proteome, the characterization of ligand-receptor pairs and the determination of secretory, endocytic, recycling and vacuolar trafficking pathways. In this review, we highlight major proteomics and imaging methods employed to determine the location, distribution and abundance of proteins within given trafficking routes. We focus in particular on methodologies for the elucidation of vesicle protein dynamics and interactions and their connections to downstream signalling outputs. Finally, we assess their biological applications in exploring different cellular and subcellular processes.

Indexed as

ProteomeProteomicsBiological TransportEndocytosisMass SpectrometryProtein TransportProteomeendocytosisexocytosisGolgimicroscopyproteomicsvesicle

Identifiers

PMID36204821
PMCPMC9884029

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.