Evidence map›Paper›PMID 36202974›Full record

ArticleNature cell biology2022

The HASTER lncRNA promoter is a cis-acting transcriptional stabilizer of HNF1A.

Anthony Beucher, Irene Miguel-Escalada, Diego Balboa, Matías G De Vas, Miguel Angel Maestro, Javier Garcia-Hurtado, Aina Bernal, Roser Gonzalez-Franco, Pierfrancesco Vargiu, Holger Heyn and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Nature cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
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  4. Metamorphosis and lncRNAs: A Close Relationship.Genesis (New York, N.Y. : 2000) · 2026
    Review
  5. eLife · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Anthony BeucherSection of Genetics and Genomics, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK. anthonybeucher@ochre-bio.com.ORCID 0000-0003-4489-1848
Irene Miguel-EscaladaSection of Genetics and Genomics, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.ORCID 0000-0003-3461-6404
Diego BalboaCentre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0002-4784-5452
Matías G De VasSection of Genetics and Genomics, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.
Miguel Angel MaestroCentre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.
Javier Garcia-HurtadoCentre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.
Aina BernalCentre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0002-6754-5668
Roser Gonzalez-FrancoSection of Genetics and Genomics, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.
Pierfrancesco VargiuTransgenics Unit, Spanish National Cancer Research Centre, Madrid, Spain.
Holger HeynCentre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0002-3276-1889
Philippe RavassardBiotechnology and Biotherapy Team, Institut du Cerveau et de la Moelle, CNRS UMR7225, INSERM U975, University Pierre et Marie Curie, Paris, France.
Sagrario OrtegaTransgenics Unit, Spanish National Cancer Research Centre, Madrid, Spain.
Jorge FerrerSection of Genetics and Genomics, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK. jorge.ferrer@crg.eu.ORCID 0000-0002-5959-5729
Centro de Investigación Biomédica en Red Diabetes y Enfermedades Metabólicas Asociadas · ESGenomics (United Kingdom) · GBSpanish National Cancer Research Centre · ESCentre for Genomic Regulation · ESCentre National de la Recherche Scientifique · FRUniversitat Pompeu Fabra · ES

Funding

Department of HealthEuropean Research Council 789055Medical Research Council MR/L02036X/1Wellcome Trust 101033Wellcome Trust WT101033
6 · The paper itself

Abstract

The biological purpose of long non-coding RNAs (lncRNAs) is poorly understood. Haploinsufficient mutations in HNF1A homeobox A (HNF1A), encoding a homeodomain transcription factor, cause diabetes mellitus. Here, we examine HASTER, the promoter of an lncRNA antisense to HNF1A. Using mouse and human models, we show that HASTER maintains cell-specific physiological HNF1A concentrations through positive and negative feedback loops. Pancreatic β cells from Haster mutant mice consequently showed variegated HNF1A silencing or overexpression, resulting in hyperglycaemia. HASTER-dependent negative feedback was essential to prevent HNF1A binding to inappropriate genomic regions. We demonstrate that the HASTER promoter DNA, rather than the lncRNA, modulates HNF1A promoter-enhancer interactions in cis and thereby regulates HNF1A transcription. Our studies expose a cis-regulatory element that is unlike classic enhancers or silencers, it stabilizes the transcription of its target gene and ensures the fidelity of a cell-specific transcription factor program. They also show that disruption of a mammalian lncRNA promoter can cause diabetes mellitus.

Indexed as

Hepatocyte Nuclear Factor 1-alphaPromoter Regions, GeneticRNA, Long NoncodingAnimalsHumansMammalsMiceTranscription, GeneticHepatocyte Nuclear Factor 1-alphaHNF1A protein, humanRNA, Long Noncoding

Identifiers

PMID36202974
PMCPMC9586874
OpenAlexW4302362699

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.