Evidence map›Paper›PMID 36202274›Full record

ArticleAlcohol (Fayetteville, N.Y.)2023

Short-term transcriptomic changes in the mouse neural tube induced by an acute alcohol exposure.

Karen E Boschen, Melina C Steensen, Jeremy M Simon, Scott E Parnell

Open access · greenAbstract read
In one paragraph

Article in Alcohol (Fayetteville, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. The Role of the Hedgehog Pathway in Alcohol-Induced Birth Defects.Advances in experimental medicine and biology · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Karen E BoschenBowles Center for Alcohol Studies, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.
Melina C SteensenBowles Center for Alcohol Studies, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.
Jeremy M SimonCarolina Institute for Developmental Disabilities, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States; UNC Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States; Department of Genetics, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.
Scott E ParnellBowles Center for Alcohol Studies, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States; Department of Cell Biology and Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States. Electronic address: sparnell@med.unc.edu.
University of North Carolina at Chapel Hill · US

Funding

UNC Neuroscience Center Research Cores: MicroscopyP30NS045892 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ZYLKA, MARK J. · 2003 to 2022
$11.5M
Preclinical CoreU54HD079124 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, YUN · 2013 to 2019
$8.0M
Cellular Mechanisms in Fetal Alcohol Spectrum DisordersR01AA026068 · NIAAA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Scott Parnell, Kevin Peter Williams · 2019 to 2026
$3.6M
Exploring the Genetics of FASD in Complementary Mouse and Fish ModelsU01AA021651 · NIAAA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI EBERHART, JOHANN K, PARNELL, SCOTT · 2012 to 2021
$3.2M
Cell Cycle Regulation in Fetal Alcohol Spectrum DisordersK99AA028273 · NIAAA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOSCHEN, KAREN ELIZABETH · 2020 to 2021
$232k
Primary cilia number and function in the neural tube in a mouse model of FASDF32AA026479 · NIAAA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOSCHEN, KAREN ELIZABETH · 2017 to 2019
$118k
NIAAA NIH HHS F32 AA026479NIAAA NIH HHS K99 AA028273NIAAA NIH HHS R01 AA026068NICHD NIH HHS U54 HD079124NINDS NIH HHS P30 NS045892
6 · The paper itself

Abstract

Alcohol exposure during the formation and closure of the neural tube, or neurulation (embryonic day [E] 8-10 in mice; ∼4th week of human pregnancy), perturbs development of midline brain structures and significantly disrupts gene expression in the rostroventral neural tube (RVNT). Previously, alcohol exposure during neurulation was found to alter gene pathways related to cell proliferation, p53 signaling, ribosome biogenesis, immune signaling, organogenesis, and cell migration 6 or 24 h after administration. Our current study expands upon this work by investigating short-term gene expression changes in the RVNT following a single binge-like alcohol exposure during neurulation. Female C57BL/6J mice were administered a single dose of 2.9 g/kg alcohol or vehicle on E9.0 to target mid-neurulation. The RVNTs of stage-matched embryos were collected 2 or 4 h after exposure and processed for RNA-seq. Functional profiling was performed with g:Profiler, as well as with the CiliaCarta and DisGeNet databases. Two hours following E9.0 alcohol exposure, 650 genes in the RVNT were differentially expressed. Functional enrichment analysis revealed that pathways related to cellular metabolism, gene expression, cell cycle, organogenesis, and Hedgehog signaling were down-regulated, and pathways related to cellular stress response, p53 signaling, and hypoxia were up-regulated by alcohol. Four hours after alcohol exposure, 225 genes were differentially expressed. Biological processes related to metabolism, RNA binding, ribosome biogenesis, and methylation were down-regulated, while protein localization and binding, autophagy, and intracellular signaling pathways were up-regulated. Two hours after alcohol exposure, the differentially expressed genes were associated with disease terms related to eye and craniofacial development and anoxia. These data provide further information regarding the biological functions targeted by alcohol exposure during neurulation in regions of the neural tube that give rise to alcohol-sensitive midline brain structures. Disruption of these gene pathways contributes to the craniofacial and brain malformations associated with prenatal alcohol exposure.

Indexed as

EthanolNeural TubePrenatal Exposure Delayed EffectsAnimalsFemaleHedgehog ProteinsMiceMice, Inbred C57BLPregnancyTranscriptomeTumor Suppressor Protein p53EthanolHedgehog ProteinsTumor Suppressor Protein p53Brain developmentEmbryoFetal alcohol spectrum disordersPrimary ciliaSonic hedgehog

Identifiers

PMID36202274
PMCPMC11096843
OpenAlexW4300860335

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.