Evidence map›Paper›PMID 36200994›Full record

ArticleJournal of the American Chemical Society2022

Aza-SAHA Derivatives Are Selective Histone Deacetylase 10 Chemical Probes That Inhibit Polyamine Deacetylation and Phenocopy HDAC10 Knockout.

Raphael R Steimbach, Corey J Herbst-Gervasoni, Severin Lechner, Tracy Murray Stewart, Glynis Klinke, Johannes Ridinger, Magalie N E Géraldy, Gergely Tihanyi, Jackson R Foley, Ulrike Uhrig and 8 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Off-target binding of the histone deacetylase inhibitor vorinostat to carbonic anhydrase II and IX.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. HDAC10 and its implications in Sézary syndrome pathogenesis.Frontiers in cell and developmental biology · 2025
    Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Raphael R SteimbachCancer Drug Development, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.ORCID 0000-0002-5509-3959
Corey J Herbst-GervasoniRoy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, United States.ORCID 0000-0002-7154-4123
Severin LechnerChair of Proteomics and Bioanalytics, Technical University of Munich, 85354 Freising, Germany.ORCID 0000-0003-2297-9208
Tracy Murray StewartDepartment of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, United States.ORCID 0000-0001-8679-6414
Glynis KlinkeCenter for Organismal Studies (COS), Heidelberg University, 69120 Heidelberg, Germany.
Johannes RidingerClinical Cooperation Unit Pediatric Oncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.
Magalie N E GéraldyCancer Drug Development, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.ORCID 0000-0001-9907-1324
Gergely TihanyiCancer Drug Development, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.ORCID 0000-0003-3729-6709
Jackson R FoleyDepartment of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, United States.
Ulrike UhrigChemical Biology Core Facility, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany.ORCID 0000-0001-8799-2249
Bernhard KusterChair of Proteomics and Bioanalytics, Technical University of Munich, 85354 Freising, Germany.ORCID 0000-0002-9094-1677
Gernot PoschetCenter for Organismal Studies (COS), Heidelberg University, 69120 Heidelberg, Germany.
Robert A CaseroDepartment of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, United States.ORCID 0000-0001-5653-3306
Guillaume MédardChair of Proteomics and Bioanalytics, Technical University of Munich, 85354 Freising, Germany.ORCID 0000-0002-4782-4029
Ina OehmeClinical Cooperation Unit Pediatric Oncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.ORCID 0000-0002-0827-2356
David W ChristiansonRoy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, United States.ORCID 0000-0002-0194-5212
Nikolas GunkelCancer Drug Development, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.
Aubry K MillerCancer Drug Development, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.ORCID 0000-0002-1761-4143
German Cancer Research Center · DEJohns Hopkins University · USTechnical University of Munich · DEHeidelberg University · DEUniversity of Pennsylvania · USEuropean Molecular Biology Laboratory · DE

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Structure and Function of MetalloenzymesR01GM049758 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIANSON, DAVID W · 1994 to 2025
$7.6M
Identification of novel spermine oxidase (SMOX) inhibitors as probes for an emerging chemoprevention targetR01CA204345 · NCI · JOHNS HOPKINS UNIVERSITY · PI CASERO, ROBERT A., WOSTER, PATRICK M · 2016 to 2020
$3.4M
Self-immolative prodrug/miRNA nanoparticle combinations for cancer treatmentR01CA235863 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI CASERO, ROBERT A., OUPICKY, DAVID · 2019 to 2023
$2.3M
NCI NIH HHS R01 CA204345NCI NIH HHS R01 CA235863NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM049758
6 · The paper itself

Abstract

We report the first well-characterized selective chemical probe for histone deacetylase 10 (HDAC10) with unprecedented selectivity over other HDAC isozymes. HDAC10 deacetylates polyamines and has a distinct substrate specificity, making it unique among the 11 zinc-dependent HDAC hydrolases. Taking inspiration from HDAC10 polyamine substrates, we systematically inserted an amino group ("aza-scan") into the hexyl linker moiety of the approved drug Vorinostat (SAHA). This one-atom replacement (C→N) transformed SAHA from an unselective pan-HDAC inhibitor into a specific HDAC10 inhibitor. Optimization of the aza-SAHA structure yielded the HDAC10 chemical probe

Indexed as

Histone Deacetylase InhibitorsIsoenzymesHeLa CellsHistone DeacetylasesHumansHydroxamic AcidsPolyaminesVorinostatZincHDAC10 protein, humanHistone Deacetylase InhibitorsHistone DeacetylasesHydroxamic AcidsIsoenzymesPolyaminesVorinostatZinc

Identifiers

PMID36200994
PMCPMC9588710
OpenAlexW4302307104

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.