Evidence map›Paper›PMID 36200822›Full record

ArticleCurrent protocols2022

Synthesis and Use of the Bifunctional Sulfenic Acid Probe BCN-E-BCN for In Vitro and Cell-Based Assays of Protein Oxidation.

Katarina Micovic, Thershan Satkunarajah, Alexandre Carnet, Mackenzie Hurst, Russell Viirre, Michael F Olson

Abstract read
In one paragraph

Article in Current protocols, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Katarina MicovicDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Ontario, Canada.
Thershan SatkunarajahDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Ontario, Canada.
Alexandre CarnetDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Ontario, Canada.
Mackenzie HurstDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Ontario, Canada.
Russell ViirreDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Ontario, Canada.
Michael F OlsonDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Ontario, Canada.

Funding

Canada Research Chairs 950-231665Natural Sciences and Engineering Research Council of Canada RGPIN-2020-05388
6 · The paper itself

Abstract

The reversible oxidation of cysteine thiol groups to sulfenic acid by reactive oxygen species (ROS) such as hydrogen peroxide can impact protein function, activity, and localization. As a consequence, ROS have profound effects on cell functions including proliferation, differentiation, and survival. Furthermore, there are clear associations between the effects of ROS on cells and the etiology of several diseases including cancer and neurodegeneration. In spite of the importance of cysteine sulfenylation as a validated post-translational modification, its labile nature impedes efficient and reproducible detection of proteins with cysteine sulfenic acid residues. To overcome this challenge, we developed a novel cell-permeable bifunctional reagent, consisting of two linked bicyclo[6.1.0]nonyne (BCN) moieties coupled with a short ethylenediamine-derived linker (BCN-E-BCN) that enables the detection of sulfenylated proteins in vitro and in intact cells. The two symmetrical BCN groups allow protein sulfenic acids to be selectively tagged with a BCN at one end while allowing for copper-free click chemistry with azide-tagged reagents of the opposite BCN. In this protocol, the synthesis of BCN-E-BCN and its use to detect cysteine sulfenic acids will be detailed. © 2022 The Authors. Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: Copper-mediated cyclopropanation of 1,5-cyclooctadiene Basic Protocol 2: Synthesis of endo- and exo-bicyclononyne Basic Protocol 3: Synthesis of endo-BCN-E-BCN Basic Protocol 4: BCN-E-BCN treatment of wild-type and cysteine-deficient mutant recombinant cofilin protein Basic Protocol 5: BCN-E-BCN labeling in live cells Basic Protocol 6: Western blotting and visualization of BCN-E-BCN-labeled samples.

Indexed as

AzidesSulfenic AcidsActin Depolymerizing FactorsCross-Linking ReagentsCysteineEthylenediaminesHydrogen PeroxideIndicators and ReagentsProteinsReactive Oxygen SpeciesSulfhydryl CompoundsActin Depolymerizing FactorsAzidesCross-Linking ReagentsCysteinecysteinesulfenic acidEthylenediaminesHydrogen PeroxideIndicators and ReagentsProteinsReactive Oxygen SpeciesSulfenic AcidsSulfhydryl Compoundsclick chemistryprotein oxidationsulfenic acid

Identifiers

PMID36200822
PMCPMC11648817

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.