Evidence map›Paper›PMID 36199680›Full record

ArticleAnnals of eye science2022

RegenX: an NLP recommendation engine for neuroregeneration topics over time.

Shaan Khosla, Leila Abdelrahman, Joseph Johnson, Mohammad Samarah, Sanjoy K Bhattacharya

Abstract read
In one paragraph

Article in Annals of eye science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shaan KhoslaNew York University, Center for Data Science, New York, NY, USA.
Leila AbdelrahmanDepartment of Ophthalmology & Miami Integrative Metabolomics Research Center, University of Miami, Bascom Palmer Eye Institute, Miami, FL, USA.
Joseph JohnsonDepartment of Marketing, University of Miami, Miami Herbert Business School, Miami, FL, USA.
Mohammad SamarahCarroll University, Wisconsin, WI, USA.
Sanjoy K BhattacharyaDepartment of Ophthalmology & Miami Integrative Metabolomics Research Center, University of Miami, Bascom Palmer Eye Institute, Miami, FL, USA.ORCID 0000-0003-3759-647X

Funding

Shared Equipment ModuleP30EY014801 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Dmitry V Ivanov · 2004 to 2026
$12.2M
Novel Targets to Promote RGC Axon Regeneration: Insights from Unique RGC CohortsU01EY027257 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BHATTACHARYA, SANJOY K, LEMMON, VANCE P · 2016 to 2018
$2.0M
XV Association for Ocular Pharmacology and Therapeutics Meeting (AOPT 2021)R13EY032326 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BHATTACHARYA, SANJOY K · 2021 to 2023
$59k
NEI NIH HHS P30 EY014801NEI NIH HHS R13 EY032326NEI NIH HHS U01 EY027257
6 · The paper itself

Abstract

Background: In this investigation, we explore the literature regarding neuroregeneration from the 1700s to the present. The regeneration of central nervous system neurons or the regeneration of axons from cell bodies and their reconnection with other neurons remains a major hurdle. Injuries relating to war and accidents attracted medical professionals throughout early history to regenerate and reconnect nerves. Early literature till 1990 lacked specific molecular details and is likely provide some clues to conditions that promoted neuron and/or axon regeneration. This is an avenue for the application of natural language processing (NLP) to gain actionable intelligence. Post 1990 period saw an explosion of all molecular details. With the advent of genomic, transcriptomics, proteomics, and other omics-there is an emergence of big data sets and is another rich area for application of NLP. How the neuron and/or axon regeneration related keywords have changed over the years is a first step towards this endeavor. Methods: Specifically, this article curates over 600 published works in the field of neuroregeneration. We then apply a dynamic topic modeling algorithm based on the Latent Dirichlet allocation (LDA) algorithm to assess how topics cluster based on topics. Results: Based on how documents are assigned to topics, we then build a recommendation engine to assist researchers to access domain-specific literature based on how their search text matches to recommended document topics. The interface further includes interactive topic visualizations for researchers to understand how topics grow closer and further apart, and how intra-topic composition changes over time. Conclusions: We present a recommendation engine and interactive interface that enables dynamic topic modeling for neuronal regeneration.

Indexed as

deep learningmachine learningnatural language processing (NLP)Regeneration

Identifiers

PMID36199680
PMCPMC9531894

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.