Evidence map›Paper›PMID 36198868›Full record

ArticleArchives of microbiology2022

Secretome analysis of an environmental isolate Enterobacter sp. S-33 identifies proteins related to pathogenicity.

Kiran Kumari, Parva Kumar Sharma, Yogender Aggarwal, Rajnish Prakash Singh

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Kiran KumariDepartment of Bioengineering and Biotechnology, BIT Mesra, Ranchi, Jharkhand, 835215, India.
Parva Kumar SharmaDepartment of Plant Sciences and Landscape Architecture, University of Maryland, College Park, MD-20742, USA.
Yogender AggarwalDepartment of Bioengineering and Biotechnology, BIT Mesra, Ranchi, Jharkhand, 835215, India.
Rajnish Prakash SinghDepartment of Bioengineering and Biotechnology, BIT Mesra, Ranchi, Jharkhand, 835215, India. manasrajnish2008@gmail.com.
Birla Institute of Technology, Mesra · INUniversity of Maryland, College Park · US

Funding

Department of Biotechnology, Ministry of Science and Technology, India BT/RLF/2020-21
6 · The paper itself

Abstract

Enterobacter species are responsible for causing infections of the lower respiratory tract, urinary tract, meninges, etc. Proteins secreted by these species may act as determinants of host-pathogen interaction and play a role in virulence. Among the secreted proteins, the Type VI secretion system (T6SS) acts as a molecular nanomachine to deliver many effector proteins directly into prey cells in a contact-dependent manner. The secreted proteins may provide an idea for the interaction of bacteria to their environment and an understanding of the role of these proteins for their role in bacterial physiology and behaviour. Therefore, aim of this study was to characterize the secreted proteins in the culture supernatant by a T6SS bacterium Enterobacter sp. S-33 using nano-LC-MS/MS tool. Using a combined mass spectrometry and bioinformatics approach, we identified a total of 736 proteins in the secretome. Bioinformatics analysis predicting subcellular localization identified 110 of the secreted proteins possessed signal sequences. By gene ontology analysis, more than 80 proteins of the secretome were classified into biological or molecular functions. More than 20 percent of secretome proteins were virulence proteins including T6SS proteins, proteins involved in adherence and fimbriae formation, molecular chaperones, outer membrane proteins, serine proteases, antimicrobial, biofilm, exotoxins, etc. In summary, the results of the present study of the S-33 secretome provide a basis for understanding the possible pathogenic mechanisms and future investigation by detailed experimental approach will provide a confirmation of secreted virulence proteins in the exact role of virulence using the in vivo model.

Indexed as

Type VI Secretion SystemsBacterial ProteinsEnterobacterExotoxinsMembrane ProteinsProtein Sorting SignalsSecretomeSerine ProteasesTandem Mass SpectrometryVirulenceBacterial ProteinsExotoxinsMembrane ProteinsProtein Sorting SignalsSerine ProteasesType VI Secretion SystemsOuter membrane proteinPathogenSecretomeT6SSVirulence

Identifiers

PMID36198868
OpenAlexW4302027335

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.