Evidence map›Paper›PMID 36198674›Full record

ArticleScientific reports2022

Tracing the oomycete pathogen Saprolegnia parasitica in aquaculture and the environment.

Dora Pavić, Dorotea Grbin, Sandra Hudina, Uršula Prosenc Zmrzljak, Anđela Miljanović, Rok Košir, Filip Varga, Josip Ćurko, Zoran Marčić, Ana Bielen

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. New Insights into the Morphological Diversity ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Dora PavićDepartment of Biochemical Engineering, Faculty of Food Technology and Biotechnology, University of Zagreb, 10000, Zagreb, Croatia.
Dorotea GrbinDepartment of Biochemical Engineering, Faculty of Food Technology and Biotechnology, University of Zagreb, 10000, Zagreb, Croatia.
Sandra HudinaDepartment of Biology, Faculty of Science, University of Zagreb, 10000, Zagreb, Croatia.
Uršula Prosenc ZmrzljakLabena Ltd, BIA Separations CRO - Molecular Biology Laboratory, 1000, Ljubljana, Slovenia.
Anđela MiljanovićDepartment of Biochemical Engineering, Faculty of Food Technology and Biotechnology, University of Zagreb, 10000, Zagreb, Croatia.
Rok KoširLabena Ltd, BIA Separations CRO - Molecular Biology Laboratory, 1000, Ljubljana, Slovenia.
Filip VargaDepartment of Seed Science and Technology, Faculty of Agriculture, University of Zagreb, 10000, Zagreb, Croatia.
Josip ĆurkoDepartment of Food Engineering, Faculty of Food Technology and Biotechnology, University of Zagreb, 10000, Zagreb, Croatia.
Zoran MarčićDepartment of Biology, Faculty of Science, University of Zagreb, 10000, Zagreb, Croatia.
Ana BielenDepartment of Biochemical Engineering, Faculty of Food Technology and Biotechnology, University of Zagreb, 10000, Zagreb, Croatia. abielen@pbf.hr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Saprolegnia parasitica causes saprolegniosis, a disease responsible for significant economic losses in aquaculture and declines of fish populations in the wild, but the knowledge of its distribution and prevalence in the environment is limited. We developed a fast, sensitive and specific S. parasitica droplet digital PCR (ddPCR) assay and demonstrated its applicability for the detection and quantification of the pathogen in environmental samples: swab DNA collected from the host (trout skin, surface of eggs) and environmental DNA extracted from water. The developed assay was used to assess how abiotic (i.e. physico-chemical parameters of the water) and biotic (health status of the host) factors influence the S. parasitica load in the environment. The pathogen load in water samples was positively correlated with some site-specific abiotic parameters such as electrical conductivity (EC) and calcium, while fluorides were negatively correlated, suggesting that physico-chemical parameters are important for determining S. parasitica load in natural waters. Furthermore, skin swabs of injured trout had significantly higher pathogen load than swabs collected from healthy fish, confirming that S. parasitica is a widespread opportunistic pathogen. Our results provide new insights into various environmental factors that influence the distribution and abundance of S. parasitica.

Indexed as

DNA, EnvironmentalFish DiseasesSaprolegniaAnimalsAquacultureCalciumFluoridesTroutWaterCalciumDNA, EnvironmentalFluoridesWater

Identifiers

PMID36198674
PMCPMC9534867

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.