Evidence map›Paper›PMID 36198651›Full record

ArticleChemMedChem2023

Importance of Co-operative Hydrogen Bonding in the Apramycin-Ribosomal Decoding A-Site Interaction.

Michael G Pirrone, Chennaiah Ande, Klara Haldimann, Sven N Hobbie, Andrea Vasella, Erik C Böttger, David Crich

Open access · hybridAbstract read
In one paragraph

Article in ChemMedChem, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Pharmaceuticals (Basel, Switzerland) · 2023
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Michael G PirroneDepartment of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, 30602, Athens, GA, USA.ORCID 0000-0003-0063-660X
Chennaiah AndeDepartment of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, 30602, Athens, GA, USA.ORCID 0000-0002-7599-894X
Klara HaldimannInstitute of Medical Microbiology, University of Zurich, Gloriastrasse 28, 8006, Zürich, Switzerland.
Sven N HobbieInstitute of Medical Microbiology, University of Zurich, Gloriastrasse 28, 8006, Zürich, Switzerland.ORCID 0000-0002-9205-0384
Andrea VasellaOrganic Chemistry Institute, ETH Zürich, Vladimir-Prelog-Weg 1-5/10, 8093, Zürich, Switzerland.ORCID 0000-0001-5989-0712
Erik C BöttgerInstitute of Medical Microbiology, University of Zurich, Gloriastrasse 28, 8006, Zürich, Switzerland.ORCID 0000-0002-2570-0121
David CrichDepartment of Pharmaceutical and Biomedical Sciences, Department of Chemistry, Complex Carbohydrate Research Center, University of Georgia, 250 West Green Street, 30602, Athens, GA, USA.ORCID 0000-0003-2400-0083
University of Georgia · USUniversity of Zurich · CHETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An intramolecular hydrogen bond between the protonated equatorial 7'-methylamino group of apramycin and the vicinal axial 6'-hydroxy group acidifies the 6'-hydroxy group leading to a strong hydrogen bond to A1408 in the ribosomal drug binding pocket in the decoding A site of the small ribosomal subunit. In 6'-epiapramycin, the trans-nature of the 6'-hydroxy group and the 7'-methylamino group results in a much weaker intramolecular hydrogen bond, and a consequently weaker cooperative hydrogen bonding network with A1408, resulting overall in reduced inhibition of protein synthesis and antibacterial activity.

Indexed as

Anti-Bacterial AgentsNebramycinAminoglycosidesHydrogen BondingRibosomesAminoglycosidesAnti-Bacterial AgentsapramycinNebramycinaminoglycoside modifying enzymesaminoglycosidesantibacterialantiribosomal activityhydrogen bonding

Identifiers

PMID36198651
PMCPMC10092258
OpenAlexW4302278185

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.