Evidence map›Paper›PMID 36196618›Full record

ArticleDevelopment (Cambridge, England)2022

The GATA factor ELT-3 specifies endoderm in Caenorhabditis angaria in an ancestral gene network.

Gina Broitman-Maduro, Simo Sun, Taisei Kikuchi, Morris F Maduro

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Evolutionary Change in Gut Specification inJournal of developmental biology · 2023
    Review
  4. The long isoform of themicroPublication biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Gina Broitman-MaduroDepartment of Molecular, Cell and Systems Biology, University of California, Riverside, CA 92521, USA.
Simo SunDepartment of Infectious Diseases, Faculty of Medicine, University of Miyazaki, 5200 Kihara, Miyazaki 889-1692, Japan.ORCID 0000-0003-0481-0468
Taisei KikuchiDepartment of Infectious Diseases, Faculty of Medicine, University of Miyazaki, 5200 Kihara, Miyazaki 889-1692, Japan.ORCID 0000-0003-2759-9167
Morris F MaduroDepartment of Molecular, Cell and Systems Biology, University of California, Riverside, CA 92521, USA.ORCID 0000-0001-6257-7612

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endoderm specification in Caenorhabditis elegans occurs through a network in which maternally provided SKN-1/Nrf, with additional input from POP-1/TCF, activates the GATA factor cascade MED-1,2→END-1,3→ELT-2,7. Orthologues of the MED, END and ELT-7 factors are found only among nematodes closely related to C. elegans, raising the question of how gut is specified in their absence in more distant species in the genus. We find that the C. angaria, C. portoensis and C. monodelphis orthologues of the GATA factor gene elt-3 are expressed in the early E lineage, just before their elt-2 orthologues. In C. angaria, Can-pop-1(RNAi), Can-elt-3(RNAi) and a Can-elt-3 null mutation result in a penetrant 'gutless' phenotype. Can-pop-1 is necessary for Can-elt-3 activation, showing that it acts upstream. Forced early E lineage expression of Can-elt-3 in C. elegans can direct the expression of a Can-elt-2 transgene and rescue an elt-7 end-1 end-3; elt-2 quadruple mutant strain to viability. Our results demonstrate an ancestral mechanism for gut specification and differentiation in Caenorhabditis involving a simpler POP-1→ELT-3→ELT-2 gene network.

Indexed as

CaenorhabditisCaenorhabditis elegans ProteinsAnimalsCaenorhabditis elegansEndodermGATA Transcription FactorsGene Regulatory NetworksCaenorhabditis elegans ProteinsELT-2 protein, C eleganselt-3 protein, C elegansGATA Transcription FactorsCaenorhabditisDevelopmental system driftELT-3Endoderm specificationGATA factorsGene network evolution

Identifiers

PMID36196618
PMCPMC9720673

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.