Evidence map›Paper›PMID 36195346›Full record

ArticleRNA (New York, N.Y.)2022

Yeast U6 snRNA made by RNA polymerase II is less stable but functional.

Karli A Lipinski, Jing Chi, Xin Chen, Aaron A Hoskins, David A Brow

Open access · greenAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Karli A LipinskiDepartment of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.ORCID 0000-0002-4271-1586
Jing ChiDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53706, USA.
Xin ChenDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Aaron A HoskinsDepartment of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.ORCID 0000-0002-9777-519X
David A BrowDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53706, USA.ORCID 0000-0002-8028-014X
University of Wisconsin–Madison · US

Funding

Mechanisms of Spliceosome Assembly and RegulationR35GM136261 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Aaron Andrew Hoskins · 2020 to 2026
$3.2M
RNA-based mechanisms in nuclear steps of gene expressionR35GM118075 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BROW, DAVID A · 2016 to 2025
$3.1M
NIGMS NIH HHS R35 GM118075NIGMS NIH HHS R35 GM136261
6 · The paper itself

Abstract

U6 small nuclear (sn)RNA is the shortest and most conserved snRNA in the spliceosome and forms a substantial portion of its active site. Unlike the other four spliceosomal snRNAs, which are synthesized by RNA polymerase (RNAP) II, U6 is made by RNAP III. To determine if some aspect of U6 function is incompatible with synthesis by RNAP II, we created a U6 snRNA gene with RNAP II promoter and terminator sequences. This "U6-II" gene is functional as the sole source of U6 snRNA in yeast, but its transcript is much less stable than U6 snRNA made by RNAP III. Addition of the U4 snRNA Sm protein binding site to U6-II increased its stability and led to formation of U6-II•Sm complexes. We conclude that synthesis of U6 snRNA by RNAP III is not required for its function and that U6 snRNPs containing the Sm complex can form in vivo. The ability to synthesize U6 snRNA with RNAP II relaxes sequence restraints imposed by intragenic RNAP III promoter and terminator elements and allows facile control of U6 levels via regulators of RNAP II transcription.

Indexed as

RNA Polymerase IISaccharomyces cerevisiaeBase SequenceRNA Polymerase IIIRNA, Small NuclearRNA SplicingRNA Polymerase IIRNA Polymerase IIIRNA, Small NuclearU6 small nuclear RNARNA polymerasesnRNAspliceosomesplicingtranscriptionyeast

Identifiers

PMID36195346
PMCPMC9670810
OpenAlexW4301179853

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.