Evidence map›Paper›PMID 36195140›Full record

ArticleThe Science of the total environment2023

Nucleic acid adductomics - The next generation of adductomics towards assessing environmental health risks.

Marcus S Cooke, Yuan-Jhe Chang, Yet-Ran Chen, Chiung-Wen Hu, Mu-Rong Chao

Abstract read
In one paragraph

Article in The Science of the total environment, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Mass Spectral Library for DNA Adductomics.Chemical research in toxicology · 2024
    Article
  7. A Novel Adductomics Workflow IncorporatingEnvironmental science & technology · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Marcus S CookeOxidative Stress Group, Department of Cell Biology, Microbiology, and Molecular Biology, University of South Florida, Tampa, FL 33620, USA. Electronic address: cookem@usf.edu.
Yuan-Jhe ChangDepartment of Occupational Safety and Health, Chung Shan Medical University, Taichung 402, Taiwan.
Yet-Ran ChenAgricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan.
Chiung-Wen HuDepartment of Public Health, Chung Shan Medical University, Taichung 402, Taiwan. Electronic address: windyhu@csmu.edu.tw.
Mu-Rong ChaoDepartment of Occupational Safety and Health, Chung Shan Medical University, Taichung 402, Taiwan; Department of Occupational Medicine, Chung Shan Medical University Hospital, Taichung 402, Taiwan. Electronic address: mrchao@csmu.edu.tw.
Chung Shan Medical University · TWAgricultural Biotechnology Research Center, Academia Sinica · TWChung Shan Medical University Hospital · TWUniversity of South Florida · US

Funding

Urinary DNA Adductomics for the Assessment of Exposure to Cancer Risk FactorsR01ES030557 · NIEHS · UNIVERSITY OF SOUTH FLORIDA · PI COOKE, MARCUS STANLEY, HU, CHIUNG-WEN · 2019 to 2023
$1.7M
NIEHS NIH HHS R01 ES030557
6 · The paper itself

Abstract

This Discussion article aims to explore the potential for a new generation of assay to emerge from cellular and urinary DNA adductomics which brings together DNA-RNA- and, to some extent, protein adductomics, to better understand the role of the exposome in environmental health. Components of the exposome have been linked to an increased risk of various, major diseases, and to identify the precise nature, and size, of risk, in this complex mixture of exposures, powerful tools are needed. Modification of nucleic acids (NA) is a key consequence of environmental exposures, and a goal of cellular DNA adductomics is to evaluate the totality of DNA modifications in the genome, on the basis that this will be most informative. Consequently, an approach which encompasses modifications of all nucleic acids (NA) would be potentially yet more informative. This article focuses on NA adductomics, which brings together the assessment of both DNA and RNA modifications, including modified (2'-deoxy)ribonucleosides (2'-dN/rN), modified nucleobases (nB), plus: DNA-DNA, RNA-RNA, DNA-RNA, DNA-protein, and RNA-protein crosslinks (DDCL, RRCL, DRCL, DPCL, and RPCL, respectively). We discuss the need for NA adductomics, plus the pros and cons of cellular vs. urinary NA adductomics, and present some evidence for the feasibility of this approach. We propose that NA adductomics provides a more comprehensive approach to the study of nucleic acid modifications, which will facilitate a range of advances, including the identification of novel, unexpected modifications e.g., RNA-RNA, and DNA-RNA crosslinks; key modifications associated with mutagenesis; agent-specific mechanisms; and adductome signatures of key environmental agents, leading to the dissection of the exposome, and its role in human health/disease, across the life course.

Indexed as

DNA AdductsNucleic AcidsDNAEnvironmental ExposureEnvironmental HealthHumansProteinsRNADNADNA AdductsNucleic AcidsProteinsRNAAdductomicsDamageExposomeMass spectrometryNucleic acidsRepair

Identifiers

PMID36195140
PMCPMC11932045
OpenAlexW4298325886

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.