ArticleBioinformatics (Oxford, England)2022
statgenMPP: an R package implementing an IBD-based mixed model approach for QTL mapping in a wide range of multi-parent populations.
Article in Bioinformatics (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed.
- Article
- Genetic dissection of grain yield and correlated proxy traits under suboptimal conditions.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Discovery and mapping of a new gene in wheat for race-specific adult plant resistance to Puccinia striiformis f. sp. tritici.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Cave evolution on repeat: reuse of the same genomic regions across lineages but not across traits inbioRxiv : the preprint server for biology · 2026Article
- Nested association mapping in oat (Avena sativa L.) identifies the location of multiple genes conferring resistance to the crown rust pathogen Puccinia coronata f. sp. avenae.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Unveiling yellow rust resistance in the near-Himalayan region: insights from a nested association mapping study.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Modeling QTL-by-environment interactions for multi-parent populations.Frontiers in plant science · 2024Article
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Authors and funding
6 authors.
Funding
Abstract
motivationMulti-parent populations (MPPs) are popular for QTL mapping because they combine wide genetic diversity in parents with easy control of population structure, but a limited number of software tools for QTL mapping are specifically developed for general MPP designs.
resultsWe developed an R package called statgenMPP, adopting a unified identity-by-descent (IBD)-based mixed model approach for QTL analysis in MPPs. The package offers easy-to-use functionalities of IBD calculations, mixed model solutions and visualizations for QTL mapping in a wide range of MPP designs, including diallele, nested-association mapping populations, multi-parent advanced genetic inter-cross populations and other complicated MPPs with known crossing schemes. AVAILABILITY AND IMPLEMENTATION: The R package statgenMPP is open-source and freely available on CRAN at https://CRAN.R-project.org/package=statgenMPP. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.