Evidence map›Paper›PMID 36192632›Full record

ArticleNature cell biology2022

Alternative RNA splicing modulates ribosomal composition and determines the spatial phenotype of glioblastoma cells.

Tatyana D Larionova, Soniya Bastola, Tatiana E Aksinina, Ksenia S Anufrieva, Jia Wang, Victoria O Shender, Dmitriy E Andreev, Tatiana F Kovalenko, Georgij P Arapidi, Polina V Shnaider and 16 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  10. Ribosome-directed cancer therapies: the tip of the iceberg?Trends in pharmacological sciences · 2025
    Review
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  12. Review
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  14. Spatial Isoforms Reveal the Mechanisms of Metastasis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  15. Ribosome Structural Changes Dynamically Affect Ribosome Function.International journal of molecular sciences · 2024
    Review
  16. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 12 institutions in 6 countries.

Tatyana D LarionovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.ORCID 0000-0003-2564-9458
Soniya BastolaDepartment of Bioengineering, University of California Los Angeles, Los Angeles, CA, USA.
Tatiana E AksininaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.ORCID 0000-0002-6770-2328
Ksenia S AnufrievaCenter for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, Moscow, Russian Federation.
Jia WangDepartment of Neurosurgery, Centre of Brain Science, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.ORCID 0000-0002-4746-035X
Victoria O ShenderShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.ORCID 0000-0001-9156-2938
Dmitriy E AndreevShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.ORCID 0000-0001-5320-3045
Tatiana F KovalenkoShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.
Georgij P ArapidiShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.
Polina V ShnaiderCenter for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, Moscow, Russian Federation.
Anastasia N KazakovaFederal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical and Biological Agency, Moscow, Russian Federation.
Yaroslav A LatyshevN.N. Burdenko National Medical Research Center of Neurosurgery, Ministry of Health of the Russian Federation, Moscow, Russian Federation.
Victor V TatarskiyInstitute of Gene Biology, Russian Academy of Sciences, Moscow, Russian Federation.
Alexander A ShtilBlokhin National Medical Research Center of Oncology, Moscow, Russian Federation.
Pascale MoreauInstitute of Chemistry of Clermont-Ferrand, CNRS, Université Clermont Auvergne, Clermont-Ferrand, France.
Francis GiraudInstitute of Chemistry of Clermont-Ferrand, CNRS, Université Clermont Auvergne, Clermont-Ferrand, France.
Chaoxi LiDepartment of Neurosurgery, School of Medicine and O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL, USA.
Yichan WangDepartment of Neurosurgery, Centre of Brain Science, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Maria P RubtsovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.
Olga A DontsovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.
Michael CondroDepartment of Bioengineering, University of California Los Angeles, Los Angeles, CA, USA.
Benjamin M EllingsonBrain Tumor Imaging Laboratory, Center for Computer Vision and Imaging Biomarkers, University of California Los Angeles, Los Angeles, CA, USA.
Mikhail I ShakhparonovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.
Harley I KornblumIntellectual and Developmental Disabilities Research Center, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.ORCID 0000-0002-3779-4540
Ichiro NakanoDepartment of Neurosurgery, Medical Institute of Hokuto, Hokkaido, Japan. ichironakano1369@gmail.com.ORCID 0000-0002-0916-3207
Marat S PavlyukovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation. marat.pav@mail.ru.ORCID 0000-0003-4829-1030
Institute of Bioorganic Chemistry · RUUniversity of California, Los Angeles · USFederal Medical-Biological Agency · RUCentre National de la Recherche Scientifique · FRFirst Affiliated Hospital of Xi'an Jiaotong University · CNLomonosov Moscow State University · RUHokuto Hospital · JPInstitute of Gene Biology · RUMinistry of Health of the Russian Federation · RUNational Medical Research Center of Cardiology · RUSkolkovo Institute of Science and Technology · RUUniversity of Alabama at Birmingham · US

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
UCLA SPORE in Brain CancerP50CA211015 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI David A. Nathanson · 2017 to 2026
$25.2M
UCLA IDDRC: Translational CoreP50HD103557 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Peyman Golshani, SUMA JACOB · 2020 to 2026
$9.6M
The unique roles of the GTP-binding/protein crosslinking enzyme transglutaminase-2 and signaling partners in aggressive cancersR01CA201402 · NCI · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2016 to 2024
$4.3M
Role of decorin and diffusion MRI in anti-VEGF efficacy for recurrent glioblastomaR01CA270027 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TIMOTHY CLOUGHESY, Benjamin M. Ellingson · 2022 to 2026
$3.0M
Radiation-induced vascular reprogramming in glioblastomaR01NS121617 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HARLEY IAN KORNBLUM · 2022 to 2026
$2.3M
Tissue-Engineered Models of Microvessel-Mediated Glioblastoma InvasionR01CA241927 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI SEIDLITS, STEPHANIE KRISTIN · 2020 to 2024
$1.9M
Brain tumor recurrence via signals from vascular endothelial cellsR01NS113631 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NAKANO, ICHIRO · 2020 to 2020
$386k
Metabolic MRI for quantifying aerobic glycolysis and immune function in gliomasR21CA223757 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ELLINGSON, BENJAMIN M. · 2018 to 2019
$366k
Radiation-Induced Crosstalk of Immune and Glioma Stem CellsR01NS107071 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NAKANO, ICHIRO · 2019 to 2019
$320k
EPA EP-C-15-003NCI NIH HHS P30 CA016042NCI NIH HHS P50 CA211015NCI NIH HHS R01 CA201402NCI NIH HHS R01 CA241927NCI NIH HHS R01 CA270027NCI NIH HHS R21 CA223757NINDS NIH HHS R01 NS107071NINDS NIH HHS R01 NS113631NINDS NIH HHS R01 NS121617
6 · The paper itself

Abstract

Glioblastoma (GBM) is characterized by exceptionally high intratumoral heterogeneity. However, the molecular mechanisms underlying the origin of different GBM cell populations remain unclear. Here, we found that the compositions of ribosomes of GBM cells in the tumour core and edge differ due to alternative RNA splicing. The acidic pH in the core switches before messenger RNA splicing of the ribosomal gene RPL22L1 towards the RPL22L1b isoform. This allows cells to survive acidosis, increases stemness and correlates with worse patient outcome. Mechanistically, RPL22L1b promotes RNA splicing by interacting with lncMALAT1 in the nucleus and inducing its degradation. Contrarily, in the tumour edge region, RPL22L1a interacts with ribosomes in the cytoplasm and upregulates the translation of multiple messenger RNAs including TP53. We found that the RPL22L1 isoform switch is regulated by SRSF4 and identified a compound that inhibits this process and decreases tumour growth. These findings demonstrate how distinct GBM cell populations arise during tumour growth. Targeting this mechanism may decrease GBM heterogeneity and facilitate therapy.

Indexed as

Brain NeoplasmsGlioblastomaAlternative SplicingCell Line, TumorGene Expression Regulation, NeoplasticHumansPhenotypeProtein IsoformsRibosomesRNA, MessengerRNA SplicingProtein IsoformsRNA, Messenger

Identifiers

PMID36192632
PMCPMC10026424
OpenAlexW4300861989

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.