Evidence map›Paper›PMID 36192583›Full record

ArticleMolecular diagnosis & therapy2022

Single Nucleotide Variants in KIF14 Gene May Have Prognostic Value in Breast Cancer.

Ivona Krus, Veronika Brynychová, Viktor Hlaváč, Radka Václavíková, Maria Kováčová, Renata Koževnikovová, Katerina Kopečková, Jannis Tornikidis, David Vrána, Jiří Gatěk and 1 more

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Article in Molecular diagnosis & therapy, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Ivona KrusToxicogenomics Unit, National Institute of Public Health, Srobarova 48, 100 42, Prague 10, Czech Republic.
Veronika BrynychováToxicogenomics Unit, National Institute of Public Health, Srobarova 48, 100 42, Prague 10, Czech Republic.
Viktor HlaváčToxicogenomics Unit, National Institute of Public Health, Srobarova 48, 100 42, Prague 10, Czech Republic.
Radka VáclavíkováToxicogenomics Unit, National Institute of Public Health, Srobarova 48, 100 42, Prague 10, Czech Republic.
Maria KováčováThird Faculty of Medicine, Charles University, Prague, Czech Republic.
Renata KoževnikovováDepartment of Oncosurgery, MEDICON, Prague, Czech Republic.
Katerina KopečkováDepartment of Oncology, Second Faculty of Medicine, Charles University and Motol University Hospital, Prague, Czech Republic.
Jannis TornikidisDepartment of Surgery, Second Faculty of Medicine, Charles University and Motol University Hospital, Prague, Czech Republic.
David VránaComprehensive Cancer Center Novy Jicin, Hospital Novy Jicin, Novy Jicin, Czech Republic.
Jiří GatěkDepartment of Surgery, EUC Hospital Zlin and Tomas Bata University in Zlin, Zlin, Czech Republic.
Pavel SoučekToxicogenomics Unit, National Institute of Public Health, Srobarova 48, 100 42, Prague 10, Czech Republic. pavel.soucek@szu.cz.ORCID 0000-0002-4294-6799
Charles University · CZNational Institute of Public Health · CZMedicon · CZMuzeum Novojičínska · CZTomas Bata University in Zlín · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionHuman kinesin 14 (KIF14) is one of the 70 prognostic marker genes (so-called Amsterdam profile) previously identified by the microarray of breast carcinomas, and its high transcript expression in tumor specimens indicates a poor prognosis for patients. We performed a pilot study to explore the prognostic and predictive meaning of KIF14 germline genetic variability in breast cancer patients.

methodsKIF14 coding sequence, including 5' and 3' untranslated regions and overlaps to introns for identification of splicing sites, was analyzed using next-generation sequencing in the testing set of blood DNA samples from 105 breast cancer patients with clinical follow-up. After rigorous evaluation of major allele frequency, haplotype blocks, in silico predicted functional aspects, expression quantitative trait loci, and clinical associations, eight single nucleotide variants were subsequently validated in the evaluation set of 808 patients.

resultsCarriers of minor alleles G (rs17448931) or T (rs3806362) had significantly shorter overall survival than wild type homozygotes (p = 0.010 and p = 0.023, respectively) thus successfully replicating the results of the testing set. Both associations remained significant in the multivariate Cox regression analysis, including molecular subtype and stage as covariates (hazard ratio, HR = 1.7, 95% confidence interval (CI) = 1.1-2.8 for rs17448931 and HR = 1.9, CI 1.2-3.0 for rs3806362). DISCUSSION: In conclusion, our preliminary data suggest that minor alleles in rs17448931 and rs3806362 of KIF14 represent candidate biomarkers of poor prognosis of breast cancer patients. After pending validation in independent populations and eventual functional characterization, these candidates might become useful biomarkers in the clinics.

Indexed as

Breast NeoplasmsKinesinsBiomarkers, TumorFemaleHumansNucleotidesOncogene ProteinsPilot ProjectsPrognosisBiomarkers, TumorKIF14 protein, humanKinesinsNucleotidesOncogene Proteins

Identifiers

PMID36192583
OpenAlexW4300860730

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.