Evidence map›Paper›PMID 36191537›Full record

ArticleEpidemics2022

Optimizing prevalence estimates for a novel pathogen by reducing uncertainty in test characteristics.

Daniel B Larremore, Bailey K Fosdick, Sam Zhang, Yonatan H Grad

Abstract read
In one paragraph

Article in Epidemics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Estimating SARS-CoV-2 seroprevalence.Journal of the Royal Statistical Society. Series A, (Statistics in Society) · 2023
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Daniel B LarremoreDepartment of Computer Science, University of Colorado Boulder, Boulder, CO, 80309, USA; BioFrontiers Institute, University of Colorado at Boulder, Boulder, CO, 80303, USA. Electronic address: daniel.larremore@colorado.edu.
Bailey K FosdickDepartment of Statistics, Colorado State University, Fort Collins, CO, 80523, USA. Electronic address: bailey.fosdick@colostate.edu.
Sam ZhangDepartment of Applied Mathematics, University of Colorado Boulder, Boulder, CO, 80309, USA.
Yonatan H GradDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, 02115, USA.

Funding

Casual, Statistical and Mathematical Modeling with Serologic DataU01CA261277 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI HANAGE, WILLIAM, LIPSITCH, MARC · 2020 to 2023
$2.8M
NCI NIH HHS U01 CA261277
6 · The paper itself

Abstract

Emergence of a novel pathogen drives the urgent need for diagnostic tests that can aid in defining disease prevalence. The limitations associated with rapid development and deployment of these tests result in a dilemma: In efforts to optimize prevalence estimates, would tests be better used in the lab to reduce uncertainty in test characteristics or to increase sample size in field studies? Here, we provide a framework to address this question through a joint Bayesian model that simultaneously analyzes lab validation and field survey data, and we define the impact of test allocation on inferences of sensitivity, specificity, and prevalence. In many scenarios, prevalence estimates can be most improved by apportioning additional effort towards validation rather than to the field. The joint model provides superior estimation of prevalence, sensitivity, and specificity, compared with typical analyses that model lab and field data separately, and it can be used to inform sample allocation when testing is limited.

Indexed as

Sensitivity and SpecificityBayes TheoremPrevalenceSample SizeBayesian inferencePrevalenceSample size calculationSensitivitySpecificity

Identifiers

PMID36191537
PMCPMC11227734

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.