Evidence map›Paper›PMID 36190960›Full record

ArticlePloS one2022

Doxorubicin induces prolonged DNA damage signal in cells overexpressing DEK isoform-2.

Emrah Özçelik, Ahmet Kalaycı, Büşra Çelik, Açelya Avcı, Hasan Akyol, İrfan Baki Kılıç, Türkan Güzel, Metin Çetin, Merve Tuzlakoğlu Öztürk, Zihni Onur Çalışkaner and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Emrah ÖzçelikDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Ahmet KalaycıDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Büşra ÇelikDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Açelya AvcıDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Hasan AkyolDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.ORCID 0000-0003-2492-2213
İrfan Baki KılıçDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Türkan GüzelDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Metin ÇetinDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Merve Tuzlakoğlu ÖztürkDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Zihni Onur ÇalışkanerDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Melike TombazDepartment of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.
Dilan YoleriDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.
Özlen KonuDepartment of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.
Ayten KandilciDepartment of Molecular Biology and Genetics, Gebze Technical University, Gebze, Kocaeli, Turkey.ORCID 0000-0003-4209-4992
Gebze Technical University · TRBilkent University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DEK has a short isoform (DEK isoform-2; DEK2) that lacks amino acid residues between 49-82. The full-length DEK (DEK isoform-1; DEK1) is ubiquitously expressed and plays a role in different cellular processes but whether DEK2 is involved in these processes remains elusive. We stably overexpressed DEK2 in human bone marrow stromal cell line HS-27A, in which endogenous DEKs were intact or suppressed via short hairpin RNA (sh-RNA). We have found that contrary to ectopic DEK1, DEK2 locates in the nucleus and nucleolus, causes persistent γH2AX signal upon doxorubicin treatment, and couldn't functionally compensate for the loss of DEK1. In addition, DEK2 overexpressing cells were more sensitive to doxorubicin than DEK1-cells. Expressions of DEK1 and DEK2 in cell lines and primary tumors exhibit tissue specificity. DEK1 is upregulated in cancers of the colon, liver, and lung compared to normal tissues while both DEK1 and DEK2 are downregulated in subsets of kidney, prostate, and thyroid carcinomas. Interestingly, only DEK2 was downregulated in a subset of breast tumors suggesting that DEK2 can be modulated differently than DEK1 in specific cancers. In summary, our findings show distinct expression patterns and subcellular location and suggest non-overlapping functions between the two DEK isoforms.

Indexed as

Chromosomal Proteins, Non-HistoneDNA DamageDoxorubicinOncogene ProteinsPoly-ADP-Ribose Binding ProteinsAmino AcidsHumansProtein IsoformsRNA, Small InterferingAmino AcidsChromosomal Proteins, Non-HistoneDEK protein, humanDoxorubicinOncogene ProteinsPoly-ADP-Ribose Binding ProteinsProtein IsoformsRNA, Small Interfering

Identifiers

PMID36190960
PMCPMC9529144
OpenAlexW4300689283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.