Evidence map›Paper›PMID 36190579›Full record

ArticleArchives of microbiology2022

Phylogenetic analysis and characterization of arsenic (As) transforming bacterial marker proteins following isolation of As-tolerant indigenous bacteria.

Md Numan Islam, Md Suzauddula, Zubayed Ahamed, Md Golam Rabby, Md Munnaf Hossen, Mrityunjoy Biswas, Mantasa Bonny, Md Mahmudul Hasan

Abstract read
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Article in Archives of microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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  4. Biotin pathway in novelFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Md Numan IslamDepartment of Nutrition and Food Technology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh.
Md SuzauddulaCollege of Agriculture and Natural Resources, National Chung Hsing University, Taichung, Taiwan.
Zubayed AhamedDepartment of Nutrition and Food Technology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh.
Md Golam RabbyDepartment of Nutrition and Food Technology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh.
Md Munnaf HossenDepartment of Immunology, Health Science Center, Shenzhen University, Shenzhen, China.
Mrityunjoy BiswasDepartment of Agro Product Processing Technology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh.
Mantasa BonnyDepartment of Nutrition and Food Technology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh.
Md Mahmudul HasanDepartment of Nutrition and Food Technology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh. hasanm_agb@yahoo.com.
National Chung Hsing University · TWShenzhen University Health Science Center · CNUniversity of Missouri · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marker proteins play a significant role in bacterial arsenic (As) transformation. Phylogenetic analysis and three-dimensional (3D) characteristics of As transforming bacterial marker proteins guide the evolutionary origin and As transforming potential of the species. Indeed, As-tolerant bacteria also show a significant level of As transformation. Hence, characterization of As transforming bacterial marker proteins, isolation of As transforming bacteria, and proper integration of the findings may guide to elucidate how bacteria transform As. Therefore, phylogenetic analysis and 3D characterization of As transforming bacterial marker protein following isolation of potential indigenous As-tolerant indigenous bacteria were done to explore the mechanism of bacterial As transformation. Phylogenetic analysis of ten As transforming marker proteins (arsA, arsB, arsC, arsD, arsR, aioA, arrA, aioB, acr1, and acr3) in 20 potential bacterial genomes (except 19 for the acr3) were studied. Some bacterial genomes featured up to five marker proteins, and therefore, 3D characteristics of the marker proteins were analyzed in those genomes having three-to-five marker proteins. In phylogeny, species in close clades represent their phylogenetic resemblances and may have similar functions. P. aeruginosa, E. coli, and K. pneumonia were found to be more effective due to having the highest number (five) of marker proteins. In 3D protein modeling, most of the marker proteins were found to be active. Among 19 indigenous bacterial isolates, multiple isolates showed tolerance up to 50 mM As(III) and 250 mM As(V), which may potentially transform a significant quantities of As. Hence, integration of the results of phylogenetic analysis, 3D protein characteristics, and As tolerance in the bacterial isolates could guide to explore the mechanism of how bacteria transform As at cellular and molecular levels.

Indexed as

ArsenicBacteriaBacterial ProteinsEscherichia coliPhylogenyArsenicBacterial Proteins3D protein structureArsenic remediationArsenic-tolerant bacteriaArsenic transforming marker proteins

Identifiers

PMID36190579
OpenAlexW4300688741

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.