Evidence map›Paper›PMID 36190277›Full record

ArticleJournal of visualized experiments : JoVE2022

Hand Dissection of Caenorhabditis elegans Intestines.

Jessica L Hill, Andrew Moore, Robert T P Williams, Erin Osborne Nishimura

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jessica L HillDepartment of Biochemistry & Molecular Biology, Colorado State University.
Andrew MooreDepartment of Biochemistry & Molecular Biology, Colorado State University.
Robert T P WilliamsDepartment of Biochemistry & Molecular Biology, Colorado State University.
Erin Osborne NishimuraDepartment of Biochemistry & Molecular Biology, Colorado State University; erinnish@colostate.edu.
Colorado State University · US

Funding

mRNA regulation, localization, and dynamics in C. elegans embryogenesisR35GM124877 · NIGMS · COLORADO STATE UNIVERSITY · PI Erin Osborne Nishimura · 2017 to 2026
$4.1M
Caenorhabditis Elegans: a Model for Genetic Interaction between the Gut Microbiota and Intestinal Epithelial CellsF32DK131636 · NIDDK · COLORADO STATE UNIVERSITY · PI HILL, JESSICA L · 2022 to 2024
$221k
NIDDK NIH HHS F32 DK131636NIGMS NIH HHS R35 GM124877
6 · The paper itself

Abstract

Comprised of only 20 cells, the Caenorhabditis elegans intestine is the nexus of many life-supporting functions, including digestion, metabolism, aging, immunity, and environmental response. Critical interactions between the C. elegans host and its environment converge within the intestine, where gut microbiota concentrate. Therefore, the ability to isolate intestine tissue away from the rest of the worm is necessary to assess intestine-specific processes. This protocol describes a method for hand dissecting adult C. elegans intestines. The procedure can be performed in fluorescently labeled strains for ease or training purposes. Once the technique is perfected, intestines can be collected from unlabeled worms of any genotype. This microdissection approach allows for the simultaneous capture of host intestinal tissue and gut microbiota, a benefit to many microbiome studies. As such, downstream applications for the intestinal preparations generated by this protocol can include but are not limited to RNA isolation from intestinal cells and DNA isolation from captured microbiota. Overall, hand dissection of C. elegans intestines affords a simple and robust method to investigate critical aspects of intestine biology.

Indexed as

Caenorhabditis elegans ProteinsGastrointestinal MicrobiomeMicrobiotaAnimalsCaenorhabditis elegansIntestinesRNACaenorhabditis elegans ProteinsRNA

Identifiers

PMID36190277
PMCPMC10368227
OpenAlexW4295812391

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.