Evidence map›Paper›PMID 36189931›Full record

ArticleAmerican journal of medical genetics. Part A2023

Comprehensive genetic screening for vascular Ehlers-Danlos syndrome through an amplification-based next-generation sequencing system.

Tomomi Yamaguchi, Shujiro Hayashi, Daisuke Hayashi, Takeshi Matsuyama, Norimichi Koitabashi, Kenichi Ogiwara, Masaaki Noda, Chiai Nakada, Shinya Fujiki, Akira Furutachi and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Diagnosis of vascular Ehlers Danlos syndrome and management of vascular complications: a vascular surgeons perspective.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Case report: further delineation ofFrontiers in genetics · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 16 institutions in 2 countries.

Tomomi YamaguchiDepartment of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Japan.
Shujiro HayashiDepartment of Dermatology, Dokkyo Medical University, Mibu, Japan.
Daisuke HayashiDepartment of Dermatology, Osaka Metropolitan University, Osaka, Japan.
Takeshi MatsuyamaDepartment of Pediatrics, Fussa Hospital, Tokyo, Japan.
Norimichi KoitabashiDepartment of Cardiovascular Medicine, Gunma University Graduate School of Medicine, Maebashi, Japan.
Kenichi OgiwaraDepartment of Pediatrics, Nara Medical University, Nara, Japan.
Masaaki NodaDepartment of Hematology, Hiroshima City Hiroshima Citizens Hospital, Hiroshima, Japan.
Chiai NakadaDivision of Rheumatology, Yuuai Medical Center, Tomigusuku, Japan.
Shinya FujikiDivision of Cardiology, Department of Medicine, Tsuruoka Municipal Shonai Hospital, Tsuruoka, Japan.
Akira FurutachiDepartment of Thoracic and Cardiovascular Surgery, National Hospital Organization Ureshino Medical Center, Saga, Japan.
Yasuhiko TanabeDepartment of Cardiology, Niigata Prefectural Shibata Hospital, Shibata, Japan.
Michiko YamanakaCenter for Medical Genetics, St. Luke's International Hospital, Tokyo, Japan.
Aki IshikawaDepartment of Medical Genetics, Sapporo Medical University School of Medicine, Sapporo, Japan.
Miyako MizukamiDepartment of Medical Genetics, Sapporo Medical University School of Medicine, Sapporo, Japan.
Asako MizuguchiDepartment of Neurosurgery, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
Kazumitsu SugiuraDepartment of Dermatology, Fujita Health University School of Medicine, Toyoake, Japan.
Makoto SumiDepartment of Cardiovascular Surgery, Saitama Cardiovascular and Respiratory Center, Saitama, Japan.
Hirokuni YamazawaDepartment of Pediatrics, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Atsushi IzawaDepartment of Cardiovascular Medicine, Shinshu University School of Medicine, Matsumoto, Japan.
Yuko WadaDivision of Cardiovascular Surgery, Department of Surgery, Shinshu University School of Medicine, Matsumoto, Japan.
Tomomi FujikawaDivision of Clinical Sequencing, Shinshu University School of Medicine, Matsumoto, Japan.
Yuri TakiguchiDivision of Clinical Sequencing, Shinshu University School of Medicine, Matsumoto, Japan.
Keiko WakuiDepartment of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Japan.
Kyoko TakanoDepartment of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Japan.ORCID https://orcid.org/0000-0002-7283-1503
Shin-Ya NishioDepartment of Hearing Implant Science, Shinshu University School of Medicine, Matsumoto, Japan.
Tomoki KoshoDepartment of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Japan.ORCID https://orcid.org/0000-0002-8344-7507
Shinshu University · JPGunma University · JPSapporo Medical University · JPCenter for Rheumatology · USDokkyo Medical University · JPFuchu Hospital · JPFujita Health University · JPHiroshima City Asa Citizens Hospital · JPHokkaido University · JPMunicipal Tsuruga Hospital · JPNara Medical University · JPNational Hospital Organization · JPNiigata Prefectural Shibata Hospital · JPOsaka Metropolitan University · JPSaitama Prefecture · JPUniversity of Miyazaki · JP

Funding

Initiative on Rare and Undiagnosed Diseases (IRUD) 21445007Japan Agency for Medical Research and DevelopmentMinistry of Health, Labour and Welfare, JapanProgram for an Integrated Database of Clinical and Genomic Information 16818213Program for an Integrated Database of Clinical and Genomic Information 16kk0205001h0501Research on Intractable Diseases 09835303Research on Intractable Diseases 10801776Research on Intractable Diseases 11948954Research Program on Policy of Measures for Intractable/Rare Diseases 20316866The Japan Society for the Promotion of Science, Japan 19K17795
6 · The paper itself

Abstract

Vascular Ehlers-Danlos syndrome (vEDS) is a hereditary connective tissue disorder (HCTD) characterized by arterial dissection/aneurysm/rupture, sigmoid colon rupture, or uterine rupture. Diagnosis is confirmed by detecting heterozygous variants in COL3A1. This is the largest Asian case series and the first to apply an amplification-based next-generation sequencing through custom panels of causative genes for HCTDs, including a specific method of evaluating copy number variations. Among 429 patients with suspected HCTDs analyzed, 101 were suspected to have vEDS, and 33 of them (32.4%) were found to have COL3A1 variants. Two patients with a clinical diagnosis of Loeys-Dietz syndrome and/or familial thoracic aortic aneurysm and dissection were also found to have COL3A1 variants. Twenty cases (57.1%) had missense variants leading to glycine (Gly) substitutions in the triple helical domain, one (2.9%) had a missense variant leading to non-Gly substitution in this domain, eight (22.9%) had splice site alterations, three (8.6%) had nonsense variants, two (5.7%) had in-frame deletions, and one (2.9%) had a multi-exon deletion, including two deceased patients analyzed with formalin-fixed and paraffin-embedded samples. This is a clinically useful system to detect a wide spectrum of variants from various types of samples.

Indexed as

Ehlers-Danlos SyndromeEhlers-Danlos Syndrome, Type IVCollagen Type IIIDNA Copy Number VariationsFemaleGenetic TestingHumansPregnancyCollagen Type IIIamplification-based next-generation sequencingCOL3A1copy number variationsformalin-fixed and paraffin-embedded (FFPE) sampleshereditary connective tissue disorders (HCTDs)vascular Ehlers-Danlos syndrome (vEDS)

Identifiers

PMID36189931
PMCPMC10092364
OpenAlexW4300688903

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.