Evidence map›Paper›PMID 36189878›Full record

ArticleEuropean journal of immunology2022

Amino acids at position 5 in the peptide/MHC binding region of a public virus-specific TCR are completely inter-changeable without loss of function.

Wesley Huisman, Melanie de Gier, Lois Hageman, Alina S Shomuradova, Didier A T Leboux, Derk Amsen, J H Frederik Falkenburg, Inge Jedema

Open access · hybridAbstract read
In one paragraph

Article in European journal of immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Wesley HuismanDepartment of Hematology, Leiden University Medical Center, The Netherlands.ORCID 0000-0002-5699-7087
Melanie de GierDepartment of Hematology, Leiden University Medical Center, The Netherlands.ORCID 0000-0003-2868-0127
Lois HagemanDepartment of Hematology, Leiden University Medical Center, The Netherlands.
Alina S ShomuradovaLaboratory for Transplantation Immunology, National Research Center for Hematology, Moscow, Russia.
Didier A T LebouxDepartment of Hematology, Leiden University Medical Center, The Netherlands.
Derk AmsenDepartment of Hematopoiesis, Sanquin Research and Landsteiner Laboratory for Blood Cell Research, Amsterdam, The Netherlands.
J H Frederik FalkenburgDepartment of Hematology, Leiden University Medical Center, The Netherlands.
Inge JedemaDepartment of Hematology, Leiden University Medical Center, The Netherlands.
Leiden University Medical Center · NLNational Medical Research Center for Hematology · RUSanquin · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anti-viral T-cell responses are usually directed against a limited set of antigens, but often contain many T cells expressing different T-cell receptors (TCRs). Identical TCRs found within virus-specific T-cell populations in different individuals are known as public TCRs, but also TCRs highly-similar to these public TCRs, with only minor variations in amino acids on specific positions in the Complementary Determining Regions (CDRs), are frequently found. However, the degree of freedom at these positions was not clear. In this study, we used the HLA-A*02:01-restricted EBV-LMP2

Indexed as

Amino AcidsReceptors, Antigen, T-CellPeptidesReceptors, Antigen, T-Cell, alpha-betaT-LymphocytesAmino AcidsPeptidesReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaamino acidspublic TCRsT-cell receptorsVDJ-recombinationvirus-specific T cells

Identifiers

PMID36189878
PMCPMC9828479
OpenAlexW4300689162

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.