Evidence map›Paper›PMID 36187925›Full record

ReviewComputational and structural biotechnology journal2022

The application of genome-wide CRISPR-Cas9 screens to dissect the molecular mechanisms of toxins.

Bei Wang, Jun-Zhu Chen, Xue-Qun Luo, Guo-Hui Wan, Yan-Lai Tang, Qiao-Ping Wang

Abstract readReview
In one paragraph

Review in Computational and structural biotechnology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. CRISPR/Cas9-Mediated Genome Editing in Cancer Therapy.International journal of molecular sciences · 2023
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bei WangLab of Metabolism and Aging, School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, PR China.
Jun-Zhu ChenDepartment of Pediatrics, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080, Guangdong Province, PR China.
Xue-Qun LuoDepartment of Pediatrics, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080, Guangdong Province, PR China.
Guo-Hui WanSchool of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou 510275, PR China.
Yan-Lai TangDepartment of Pediatrics, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080, Guangdong Province, PR China.
Qiao-Ping WangLab of Metabolism and Aging, School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, PR China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many toxins are life-threatening to both animals and humans. However, specific antidotes are not available for most of those toxins. The molecular mechanisms underlying the toxicology of well-known toxins are not yet fully characterized. Recently, the advance in CRISPR-Cas9 technologies has greatly accelerated the process of revealing the toxic mechanisms of some common toxins on hosts from a genome-wide perspective. The high-throughput CRISPR screen has made it feasible to untangle complicated interactions between a particular toxin and its corresponding targeting tissue(s). In this review, we present an overview of recent advances in molecular dissection of toxins' cytotoxicity by using genome-wide CRISPR screens, summarize the components essential for toxin-specific CRISPR screens, and propose new strategies for future research.

Indexed as

AAPCC, American Association of Poison Control CentersABE, Adenine Base EditorBacterial toxinCBE, Cytosine Base EditorCISRPRCRISPRa, CRISPR activationCRISPR-Cas9 screenCRISPR, Clustered Regularly Interspaced Short Palindromic RepeatsCRISPRi, CRISPR interferenceDSB, Double-Strand BreakGeCKOGeCKO, CRISPR Knockout Pooled LibraryGenome-wideGOF, Gain-of-functionLOF, Loss-of-functionMAGeCK, Model-based Analysis of Genome-wide CRISPR-Cas9 KnockoutMechanismMycotoxinNGS, Next-Generation SequencingNHEJ, Non-Homologous End JoiningsgRNA, single guide RNAToxicantToxinVenom

Identifiers

PMID36187925
PMCPMC9489804

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.