Evidence map›Paper›PMID 36184534›Full record

ArticleInternal medicine (Tokyo, Japan)2022

Whole Exome Sequencing Insufficient for a Definitive Diagnosis of a Patient with Compound Heterozygous Familial Hypercholesterolemia.

Hirofumi Okada, Hayato Tada, Akihiro Nomura, Atsushi Nohara, Kazuyasu Okeie, Tsuyoshi Nozue, Ichiro Michishita, Masayuki Takamura, Hirofumi Takemura, Masa-Aki Kawashiri

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In one paragraph

Article in Internal medicine (Tokyo, Japan), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Hirofumi OkadaDepartment of Cardiovascular Medicine, Kanazawa University Graduate School of Medical Sciences, Japan.
Hayato TadaDepartment of Cardiovascular Medicine, Kanazawa University Graduate School of Medical Sciences, Japan.
Akihiro NomuraDepartment of Cardiovascular Medicine, Kanazawa University Graduate School of Medical Sciences, Japan.
Atsushi NoharaDepartment of Genetics, Ishikawa Prefectural Central Hospital, Japan.
Kazuyasu OkeieDepartment of Cardiology, Koseiren Takaoka Hospital, Japan.
Tsuyoshi NozueDivision of Cardiology, Department of Internal Medicine, Yokohama Sakae Kyosai Hospital, Japan.
Ichiro MichishitaDivision of Cardiology, Department of Internal Medicine, Yokohama Sakae Kyosai Hospital, Japan.
Masayuki TakamuraDepartment of Cardiovascular Medicine, Kanazawa University Graduate School of Medical Sciences, Japan.
Hirofumi TakemuraDepartment of Cardiovascular Surgery, Kanazawa University, Japan.
Masa-Aki KawashiriDepartment of Cardiovascular Medicine, Kanazawa University Graduate School of Medical Sciences, Japan.
Kanazawa University · JPYokohama Sakae Kyosai Hospital · JPIshikawa Prefectural Central Hospital · JPKouseiren Takaoka Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homozygous familial hypercholesterolemia (HoFH) is a rare genetic disorder, and a genetic analysis is important to make a definitive diagnosis. A comprehensive genetic analysis using next generation sequencing (NGS) and whole exome sequencing (WES) is feasible. However, the application of NGS in the assessment of genomic structural variations is generally limited, and a substantial number of control samples are needed for such assessments. Thus, NGS alone is unlikely to detect genomic structural variations in a "singleton." We present the case of a patient with compound HeFH (heterozygous FH), whose causative mutations in the LDLR gene could not be identified by WES, necessitating the application of the multiplex ligation-dependent probe amplification (MLPA) technique.

Indexed as

Hyperlipoproteinemia Type IIReceptors, LDLExome SequencingGenetic TestingHeterozygoteHumansMutationReceptors, LDLfamilial hypercholesterolemiamultiplex ligation-dependent probe amplificationwhole exome sequencing

Identifiers

PMID36184534
PMCPMC9593155
OpenAlexW4299878890

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.