Evidence map›Paper›PMID 36182685›Full record

ArticleDevelopmental cell2022

Pluripotency factors are repurposed to shape the epigenomic landscape of neural crest cells.

Austin S Hovland, Debadrita Bhattacharya, Ana Paula Azambuja, Dimitrius Pramio, Jacqueline Copeland, Megan Rothstein, Marcos Simoes-Costa

Open access · greenAbstract read
In one paragraph

Article in Developmental cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 57 citations in OpenAlex.

  1. The lipid raft-linker gene Raftlin-2 is expressed in migrating neural crest cells.Differentiation; research in biological diversity · 2026
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  4. Review
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  6. Review
  7. A dual role for GLI3 signaling in neural crest development.Development (Cambridge, England) · 2026
    Article
  8. Article
  9. Epigenetic crosstalk in neuroblastoma development and progression.Frontiers in cell and developmental biology · 2026
    Review
  10. Article
  11. Article
  12. Ectomesenchymal identity emerges via relief ofbioRxiv : the preprint server for biology · 2025
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Gag proteins encoded by endogenous retroviruses are required for zebrafish development.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Austin S HovlandDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA.
Debadrita BhattacharyaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA.
Ana Paula AzambujaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA; Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology, Boston Children's Hospital, Boston, MA 02115, USA.
Dimitrius PramioDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA; Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology, Boston Children's Hospital, Boston, MA 02115, USA.
Jacqueline CopelandDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA; Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology, Boston Children's Hospital, Boston, MA 02115, USA.
Megan RothsteinDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA; Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology, Boston Children's Hospital, Boston, MA 02115, USA.
Marcos Simoes-CostaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA; Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology, Boston Children's Hospital, Boston, MA 02115, USA. Electronic address: marcos@hms.harvard.edu.
Boston Children's Hospital · USCornell University · USHarvard University · USCenter for Systems Biology · US

Funding

Genomic control of neural crest identity by signaling systemsR01DE028576 · NIDCR · CORNELL UNIVERSITY · PI SIMOES-COSTA, MARCOS · 2019 to 2023
$1.9M
Research and Career Training in Vertebrate Developmental GenomicsT32HD057854 · NICHD · CORNELL UNIVERSITY · PI SCHIMENTI, JOHN C · 2010 to 2020
$1.3M
NICHD NIH HHS T32 HD057854NIDCR NIH HHS R01 DE028576
6 · The paper itself

Abstract

Yamanaka factors are essential for establishing pluripotency in embryonic stem cells, but their function in multipotent stem cell populations is poorly understood. Here, we show that OCT4 and SOX2 cooperate with tissue-specific transcription factors to promote neural crest formation. By assessing avian and human neural crest cells at distinct developmental stages, we characterized the epigenomic changes that occur during their specification, migration, and early differentiation. This analysis determined that the OCT4-SOX2 dimer is required to establish a neural crest epigenomic signature that is lost upon cell fate commitment. The OCT4-SOX2 genomic targets in the neural crest differ from those of embryonic stem cells, indicating the dimer displays context-specific functions. Binding of OCT4-SOX2 to neural crest enhancers requires pioneer factor TFAP2A, which physically interacts with the dimer to modify its genomic targets. Our results demonstrate how Yamanaka factors are repurposed in multipotent cells to control chromatin organization and define their developmental potential.

Indexed as

Neural CrestOctamer Transcription Factor-3Cell DifferentiationChromatinEpigenomicsHumansSOXB1 Transcription FactorsTranscription FactorsChromatinOctamer Transcription Factor-3SOXB1 Transcription FactorsTranscription Factorsepigenomemultipotencyneural crestOCT4pioneer transcription factorspluripotencySOX2stem cellsTFAP2AYamanaka factors

Identifiers

PMID36182685
PMCPMC9743141
OpenAlexW4298127694

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.