Evidence map›Paper›PMID 36181454›Full record

ArticleInternational wound journal2023

Characterisation of key biomarkers in diabetic ulcers via systems bioinformatics.

Zhan Zhang, Ying Zhang, Dan Yang, Yue Luo, Ying Luo, Yi Ru, Jiankun Song, Xiaoya Fei, Yiran Chen, Bin Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in International wound journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Zhan ZhangDepartment of Dermatology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Ying ZhangDepartment of Dermatology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Dan YangDepartment of Dermatology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Yue LuoDepartment of Integrated TCM and Western Medicine, Shanghai Skin Disease Hospital, Tongji University, Shanghai, China.
Ying LuoDepartment of Dermatology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Yi RuDepartment of Dermatology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Jiankun SongDepartment of Integrated TCM and Western Medicine, Shanghai Skin Disease Hospital, Tongji University, Shanghai, China.
Xiaoya FeiDepartment of Integrated TCM and Western Medicine, Shanghai Skin Disease Hospital, Tongji University, Shanghai, China.
Yiran ChenDepartment of Dermatology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Bin LiInstitute of Dermatology, Shanghai Academy of Traditional Chinese Medicine, Shanghai, China.ORCID https://orcid.org/0000-0002-8607-8874
Jingsi JiangDepartment of Skin and Cosmetics Research, Shanghai Skin Disease Hospital, Tongji University, Shanghai, China.
Le KuaiDepartment of Dermatology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Shanghai University of Traditional Chinese Medicine · CNTongji University · CN

Funding

Clinical Transformation Incubation Program in Hospital lczh2021-05Innovative Training Program for Graduate Students in Shanghai University of Traditional Chinese Medicine JY611.02.03.83National Key Research and Development Program of China 2018YFC1705305National Natural Science Foundation of China 81973860National Natural Science Foundation of China 82004235National Natural Science Foundation of China 82174383National Youth Foundation of China 81904214Shanghai Clinical Key Specialty Construction Project shslczdzk05001Shanghai Sailing Program 21YF1448100Shanghai Sailing Program 22YF1441300Shanghai Sailing Program 22YF1450000Three-Year Action Plan of Shanghai Municipality for further acceleration of the development of Chinese medicine ZY(2018-2020)-FWTX-1008Three-Year Action Plan of Shanghai Municipality for further acceleration of the development of Chinese medicine ZY(2018-2020)-FWTX-4010Xinglin Youth Scholar of Shanghai University of Traditional Chinese Medicine RY411.33.10Young Elite Scientists Sponsorship Program of China Association of Chinese Medicine 2021-QNRC2-A10
6 · The paper itself

Abstract

Diabetic ulcers (DUs) are characterised by a high incidence and disability rate. However, its pathogenesis remains elusive. Thus, a deep understanding of the underlying mechanisms for the pathogenesis of DUs has vital implications. The weighted gene co-expression network analysis was performed on the main data from the Gene Expression Omnibus database. Gene Ontology (GO) terms, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis were adopted to analyse the potential biological function of the most relevant module. Furthermore, we utilised CytoHubba and protein-protein interaction network to identify the hub genes. Finally, the hub genes were validated by animal experiments in diabetic ulcer mice models. The expression of genes from the turquoise module was found to be strongly related to DUs. GO terms, KEGG analysis showed that biological functions are closely related to immune response. The hub genes included IFI35, IFIT2, MX2, OASL, RSAD2, and XAF1, which were higher in wounds of DUs mice than that in normal lesions. Additionally, we also demonstrated that the expression of hub genes was correlated with the immune response using immune checkpoint, immune cell infiltration, and immune scores. These data suggests that IFI35, IFIT2, MX2, OASL, RSAD2, and XAF1 are crucial for DUs.

Indexed as

Diabetes MellitusUlcerAnimalsBiomarkersComputational BiologyDatabases, FactualMiceBiomarkersbioinformaticsbiomarkersdiabetes complicationsulcer

Identifiers

PMID36181454
PMCPMC9885479
OpenAlexW4298326474

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.