Evidence map›Paper›PMID 36181310›Full record

ArticleJournal of clinical laboratory analysis2022

GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma.

Shimao Song, Xinzhou Deng, Shan Jiang, Chao Tian, Jiahui Han, Jingjing Chai, Na Li, Yutao Yan, Zhiguo Luo

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Shimao SongDepartment of Clinical Oncology, Taihe Hospital, Hubei University of Medicine, Shiyan, China.
Xinzhou DengDepartment of Clinical Oncology, Taihe Hospital, Hubei University of Medicine, Shiyan, China.ORCID https://orcid.org/0000-0002-9775-4604
Shan JiangThe First Clinical College of Hubei University of Medicine, Shiyan, China.
Chao TianThe First Clinical College of Hubei University of Medicine, Shiyan, China.
Jiahui HanDepartment of Clinical Oncology, Taihe Hospital, Jinzhou Medical University Union Training Base, Shiyan, China.
Jingjing ChaiDepartment of Clinical Oncology, Taihe Hospital, Hubei University of Medicine, Shiyan, China.
Na LiThe First Clinical College of Hubei University of Medicine, Shiyan, China.
Yutao YanDepartment of Clinical Oncology, Taihe Hospital, Hubei University of Medicine, Shiyan, China.
Zhiguo LuoDepartment of Clinical Oncology, Taihe Hospital, Hubei University of Medicine, Shiyan, China.
Hubei University of Medicine · CNTaihe Hospital · CN

Funding

Health Commission of Hubei Province WJ2021M048The Foundation for Free Exploration of Hubei University of Medicine FDFR201802the National Nature Science Foundation of China 81802997the Natural Science Foundation of Hubei Province of China 2018CFB405the Natural Science Foundation of Hubei Province of China 2019CFA034the Natural Science Foundation of Hubei Provincial Department of Education D20172102the Natural Science Foundation of Hubei Provincial Department of Education Q20202106the Scientific and Technological Project of Shiyan City of Hubei Province 21Y18
6 · The paper itself

Abstract

backgroundGRAP2 is an adaptor protein involved in leukocyte signal activation; however, the prognostic value of GRAP2 and its correlation with immune infiltration in lung adenocarcinoma (LUAD) are unclear.

methodsOriginal data were downloaded from the TCGA database and Gene Expression Omnibus (GEO) database. GRAP2 expression was analyzed with the TCGA and TIMER databases. We evaluated the influence of GRAP2 on clinical prognosis using the Kaplan-Meier plotter, GEO, and GEPIA database. The TIMER and TISIDB databases were used to investigate correlations between GRAP2 expression and cancer immune characteristics. Finally, we confirmed the expression of GRAP2 in LUAD by immunohistochemistry staining.

resultsThe transcription levels of GRAP2 were significantly lower in several human cancer types, including LUAD, than in adjacent normal tissues. Immunohistochemistry staining confirmed that LUAD tumor tissues had lower GRAP2 protein expression levels than adjacent normal tissues. GRAP2 downregulation was associated with poorer overall survival, pathologic stage, T stage, N stage, and primary therapy outcome in LUAD. Mechanistically, we found a hub gene set that included a total of 91 genes coexpressed with GRAP2, which were closely related to the immune response in LUAD. The expression levels of GRAP2 were positively correlated with the infiltration levels of multiple immune cells and the cumulative survival time of a few immune cells. GRAP2 expression was found to be positively correlated with that of multiple immune markers, chemokines, chemokine receptors, and MHC molecules in LUAD.

conclusionsGRAP2 can be used as a biomarker for assessing prognosis and immune infiltration levels in LUAD.

Indexed as

Adenocarcinoma of LungLung NeoplasmsBiomarkersGene Expression Regulation, NeoplasticHumansPrognosisBiomarkersGRAP2immune infiltrationlung adenocarcinomaprognostic biomarker

Identifiers

PMID36181310
PMCPMC9701895
OpenAlexW4298326616

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.