Evidence map›Paper›PMID 36180492›Full record

ArticleScientific reports2022

Crystal structures of FNIP/FGxxFN motif-containing leucine-rich repeat proteins.

Trevor Huyton, Mamta Jaiswal, Waltraud Taxer, Matthias Fischer, Dirk Görlich

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Endogenous virophages are active and mitigate giant virus infection in the marine protistProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Trevor HuytonDepartment of Cellular Logistics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany. trevor.huyton@mpinat.mpg.de.
Mamta JaiswalDepartment of Cellular Logistics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Waltraud TaxerDepartment of Cellular Logistics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Matthias FischerDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Heidelberg, Germany.
Dirk GörlichDepartment of Cellular Logistics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany. goerlich@mpinat.mpg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Cafeteria roenbergensis virus (Crov), Dictyostelium, and other species encode a large family of leucine-rich repeat (LRR) proteins with FGxxFN motifs. We determined the structures of two of them and observed several unique structural features that set them aside from previously characterized LRR family members. Crov588 comprises 25 regular repeats with a LxxLxFGxxFNQxIxENVLPxx consensus, forming a unique closed circular repeat structure. Novel features include a repositioning of a conserved asparagine at the middle of the repeat, a double phenylalanine spine that generates an alternate core packing arrangement, and a histidine/tyrosine ladder on the concave surface. Crov539 is smaller, comprising 12 repeats of a similar LxxLxFGxxFNQPIExVxW/LPxx consensus and forming an unusual cap-swapped dimer structure. The phenylalanine spine of Crov539 is supplemented with a tryptophan spine, while a hydrophobic isoleucine-rich patch is found on the central concave surface. We present a detailed analysis of the structures of Crov588 and Crov539 and compare them to related repeat proteins and other LRR classes.

Indexed as

DictyosteliumLeucine-Rich Repeat ProteinsAmino Acid SequenceAsparagineHistidineIsoleucineLeucinePhenylalanineTryptophanTyrosineAsparagineHistidineIsoleucineLeucineLeucine-Rich Repeat ProteinsPhenylalanineTryptophanTyrosine

Identifiers

PMID36180492
PMCPMC9525666

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.