Evidence map›Paper›PMID 36180459›Full record

ArticleScientific reports2022

Forward genetic screening identifies novel roles for N-terminal acetyltransferase C and histone deacetylase in C. elegans development.

Rose Aria Malinow, Ming Zhu, Yishi Jin, Kyung Won Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. MultiplebioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Rose Aria Malinow *Department of Neurobiology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.
Ming Zhu *Department of Neurobiology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.
Yishi JinDepartment of Neurobiology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA. yijin@ucsd.edu.
Kyung Won KimDepartment of Life Science, Hallym University, Chuncheon, 24252, South Korea. kwkim@hallym.ac.kr.
University of California, San Diego · USHallym University · KR

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Cytoskeletal dynamics in axon regenerationR01NS093588 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHISHOLM, ANDREW D, JIN, YISHI · 2015 to 2023
$3.7M
GABAergic Neuron Differentiation in C.elegansR37NS035546 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JIN, YISHI · 2017 to 2021
$2.4M
Roles and Regulation of the bZip Transcription Factor CEBP-1 in Stress Response PathwaysF31GM131677 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MALINOW, ROSE · 2019 to 2021
$115k
NIGMS NIH HHS F31 GM131677NIH HHS NS R01-NS093588S1NIH HHS P40 OD010440NIH HHS R01 NS093588NINDS NIH HHS R01 NS093588NINDS NIH HHS R37 NS035546
6 · The paper itself

Abstract

Coordinating the balance between development and stress responses is critical for organismal survival. However, the cellular signaling controlling this mechanism is not well understood. In Caenorhabditis elegans, it has been hypothesized that a genetic network regulated by NIPI-3/Tibbles may control the balance between animal development and immune response. Using a nipi-3(0) lethality suppressor screen in C. elegans, we reveal a novel role for N-terminal acetyltransferase C complex natc-1/2/3 and histone deacetylase hda-4, in the control of animal development. These signaling proteins act, at least in part, through a PMK-1 p38 MAP kinase pathway (TIR-1-NSY-1-SEK-1-PMK-1), which plays a critical role in the innate immunity against infection. Additionally, using a transcriptional reporter of SEK-1, a signaling molecule within this p38 MAP kinase system that acts directly downstream of C/EBP bZip transcription factor CEBP-1, we find unexpected positive control of sek-1 transcription by SEK-1 along with several other p38 MAP kinase pathway components. Together, these data demonstrate a role for NIPI-3 regulators in animal development, operating, at least in part through a PMK-1 p38 MAPK pathway. Because the C. elegans p38 MAP kinase pathway is well known for its role in cellular stress responses, the novel biological components and mechanisms pertaining to development identified here may also contribute to the balance between stress response and development.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsBasic-Leucine Zipper Transcription FactorsGene Regulatory NetworksGenetic TestingHistone DeacetylasesImidazolesImmunity, InnateMAP Kinase Signaling SystemNitrilesN-Terminal Acetyltransferase Cp38 Mitogen-Activated Protein KinasesProtein KinasesBasic-Leucine Zipper Transcription FactorsCaenorhabditis elegans ProteinsHDA-4 protein, C elegansHistone DeacetylasesImidazolesN-(2-nitro-4-isothiocyanophenyl)imidazoleNIPI-3 protein, C elegansNitrilesN-Terminal Acetyltransferase Cp38 Mitogen-Activated Protein KinasesProtein Kinases

Identifiers

PMID36180459
PMCPMC9525577
OpenAlexW4298138006

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.