Evidence map›Paper›PMID 36180430›Full record

ArticleNature communications2022

ANGEL2 phosphatase activity is required for non-canonical mitochondrial RNA processing.

Paula Clemente, Javier Calvo-Garrido, Sarah F Pearce, Florian A Schober, Megumi Shigematsu, Stefan J Siira, Isabelle Laine, Henrik Spåhr, Christian Steinmetzger, Katja Petzold and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Enzymology of the metazoan tRNA ligase complex: a lifetime in cycles.Cellular and molecular life sciences : CMLS · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Mechanisms and regulation of human mitochondrial transcription.Nature reviews. Molecular cell biology · 2024
    Review
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 5 countries.

Paula ClementeDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden. paula.clemente@ki.se.ORCID 0000-0002-6885-3750
Javier Calvo-GarridoDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.
Sarah F PearceDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.
Florian A SchoberDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.ORCID 0000-0003-4604-6170
Megumi ShigematsuComputational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.
Stefan J SiiraHarry Perkins Institute of Medical Research, QEII Medical Centre and University of Western Australia, Nedlands, WA, 6009, Australia.ORCID 0000-0002-8391-0143
Isabelle LaineDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.ORCID 0000-0002-6791-9906
Henrik SpåhrDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.
Christian SteinmetzgerDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.
Katja PetzoldDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.ORCID 0000-0001-9470-0347
Yohei KirinoComputational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.ORCID 0000-0001-5232-4742
Rolf WibomDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.
Oliver RackhamHarry Perkins Institute of Medical Research, QEII Medical Centre and University of Western Australia, Nedlands, WA, 6009, Australia.
Aleksandra FilipovskaHarry Perkins Institute of Medical Research, QEII Medical Centre and University of Western Australia, Nedlands, WA, 6009, Australia.ORCID 0000-0002-6998-8403
Joanna RorbachDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden.ORCID 0000-0002-2891-2840
Christoph Freyer *Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden. christoph.freyer@ki.se.ORCID 0000-0003-0418-1673
Anna Wredenberg *Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 65, Stockholm, Sweden. anna.wredenberg@ki.se.ORCID 0000-0002-2500-6121
Karolinska Institutet · SEKarolinska University Hospital · SEThe University of Western Australia · AUThomas Jefferson University · USThe Kids Research Institute Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Canonical RNA processing in mammalian mitochondria is defined by tRNAs acting as recognition sites for nucleases to release flanking transcripts. The relevant factors, their structures, and mechanism are well described, but not all mitochondrial transcripts are punctuated by tRNAs, and their mode of processing has remained unsolved. Using Drosophila and mouse models, we demonstrate that non-canonical processing results in the formation of 3' phosphates, and that phosphatase activity by the carbon catabolite repressor 4 domain-containing family member ANGEL2 is required for their hydrolysis. Furthermore, our data suggest that members of the FAST kinase domain-containing protein family are responsible for these 3' phosphates. Our results therefore propose a mechanism for non-canonical RNA processing in metazoan mitochondria, by identifying the role of ANGEL2.

Indexed as

RNARNA Processing, Post-TranscriptionalAnimalsCarbonDrosophilaExoribonucleasesMammalsMicePhosphatesPhosphoric Monoester HydrolasesRNA, MitochondrialRNA, TransferCarbonExoribonucleasesPhosphatesPhosphoric Monoester HydrolasesRNARNA, MitochondrialRNA, Transfer

Identifiers

PMID36180430
PMCPMC9525292
OpenAlexW4298140201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.