Evidence map›Paper›PMID 36177104›Full record

ArticleHepatology forum2022

Cell-free methylation of RASSF1 and CDKN2AIP genes in the diagnosis of hepatocellular carcinoma associated with hepatitis B virus cirrhosis.

Pelin Telli, Nazli Begum Ozturk, Mehmet Tolgahan Hakan, Bilger Cavus, Asli Cifcibasi Ormeci, Aysun Yakut, Volkan Senkal, Ziya Imanov, Arzu Poyanli, Emine Goknur Isik and 5 more

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In one paragraph

Article in Hepatology forum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Is Cell-Free DNA Testing in Hepatocellular Carcinoma Ready for Prime Time?International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Pelin TelliDepartment of Internal Medicine, Istanbul University, Istanbul School of Medicine, Istanbul, Turkiye.
Nazli Begum OzturkDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Mehmet Tolgahan HakanDepartment of Molecular Medicine, Istanbul University, Aziz Sancar Institute of Experimental Medicine, Istanbul, Turkiye.
Bilger CavusDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Asli Cifcibasi OrmeciDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Aysun YakutDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Volkan SenkalDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Ziya ImanovDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Arzu PoyanliDepartment of Radiology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkiye.
Emine Goknur IsikDepartment of Nuclear Medicine, Istanbul University, Istanbul School of Medicine, Istanbul, Turkiye.
Kadir DemirDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Fatih BesisikDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Sabahattin KaymakogluDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Ilhan YaylimDepartment of Molecular Medicine, Istanbul University, Aziz Sancar Institute of Experimental Medicine, Istanbul, Turkiye.
Filiz AkyuzDepartment of Gastroenterology and Hepatology, Istanbul University, Istanbul School of Medicine, Istanbul, Turkey.
Istanbul University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Aim: Chronic hepatitis B virus (HBV) infection is a major cause of hepatocellular carcinoma (HCC). Circulating cell-free DNA (cfDNA) methylation of tumor suppressor genes are emerging potential biomarkers in HCC. We aimed to evaluate the cfDNA methylation status of RASSF1 and CDKN2AIP genes in patients with liver cirrhosis (LC) with or without HCC caused by HBV. Materials and Methods: A total of 47 patients with HBV cirrhosis were included in the study. Patients were divided into two groups: HCC and LC (HCC+LC, n=22) and HBV cirrhosis only (LC, n=25). cfDNA was isolated from the plasma samples of the patients. Methylation analysis was performed for RASSF1 and CDKN2AIP genes. Results: Mean methylation percentage of CDKN2AIP gene was 0.001±0.004% in the HCC+LC group and 0.008±0.004 % in the LC only group. The mean methylation percentage of RASSF1 gene was 5.1±16.1% in the HCC+LC group and 9.7±25.9% in the LC only group. The methylation rate of CDKN2AIP was significantly lower in the HCC+LC group (p=0.027). A positive correlation was found with the absence of cfDNA methylation of CDKN2AIP gene in the presence of HCC (R=0.667, p=0.018). Conclusion: cfDNA methylation of CDKN2AIP and RASSF1 genes may provide important diagnostic information regarding the development of HCC in the setting of HBV cirrhosis.

Indexed as

Cirrhosishepatitis B virushepatocellular carcinoma

Identifiers

PMID36177104
PMCPMC9510732
OpenAlexW4296713235

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.