Evidence map›Paper›PMID 36175871›Full record

ArticleBMC genomics2022

A conserved transcriptional fingerprint of multi-neurotransmitter neurons necessary for social behavior.

Denver Ncube, Alexandra Tallafuss, Jen Serafin, Joseph Bruckner, Dylan R Farnsworth, Adam C Miller, Judith S Eisen, Philip Washbourne

Abstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Loss ofFrontiers in neuroscience · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Denver NcubeInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Alexandra TallafussInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Jen SerafinInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Joseph BrucknerInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Dylan R FarnsworthInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Adam C MillerInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Judith S EisenInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Philip WashbourneInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA. pwash@uoregon.edu.

Funding

A Single-Cell Transcriptome Atlas for Zebrafish DevelopmentR24OD026591 · OD · UNIVERSITY OF OREGON · PI KIMMEL, CHARLES B, MILLER, ADAM C · 2019 to 2022
$3.0M
Bacterial influences on synapse formationR33MH104188 · NIMH · UNIVERSITY OF OREGON · PI EISEN, JUDITH S, WASHBOURNE, PHILIP ERIC · 2016 to 2018
$1.9M
NIH Office of the Director R24OD026591NIMH NIH HHS R33MH104188
6 · The paper itself

Abstract

backgroundAn essential determinant of a neuron's functionality is its neurotransmitter phenotype. We previously identified a defined subpopulation of cholinergic neurons required for social orienting behavior in zebrafish.

resultsWe transcriptionally profiled these neurons and discovered that they are capable of synthesizing both acetylcholine and GABA. We also established a constellation of transcription factors and neurotransmitter markers that can be used as a "transcriptomic fingerprint" to recognize a homologous neuronal population in another vertebrate.

conclusionOur results suggest that this transcriptomic fingerprint and the cholinergic-GABAergic neuronal subtype that it defines are evolutionarily conserved.

Indexed as

AcetylcholineZebrafishAnimalsCholinergic AgentsCholinergic Neuronsgamma-Aminobutyric AcidNeurotransmitter AgentsSocial BehaviorTranscription FactorsAcetylcholineCholinergic Agentsgamma-Aminobutyric AcidNeurotransmitter AgentsTranscription FactorsNeuronal identityNeurotransmitterSocial behaviorTranscription factors

Identifiers

PMID36175871
PMCPMC9523972

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.