Evidence map›Paper›PMID 36174229›Full record

ArticleAmerican journal of respiratory cell and molecular biology2023

A Novel MIP-1-Expressing Macrophage Subtype in BAL Fluid from Healthy Volunteers.

Paul A Reyfman, Elizabeth S Malsin, Basil Khuder, Nikita Joshi, Gaurav Gadhvi, Annette S Flozak, Mary A Carns, Kathleen Aren, Isaac A Goldberg, Seokjo Kim and 8 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Paul A ReyfmanDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.ORCID 0000-0002-6435-6001
Elizabeth S MalsinDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Basil KhuderDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Nikita JoshiDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Gaurav GadhviDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Annette S FlozakDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Mary A CarnsDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Kathleen ArenDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Isaac A GoldbergDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Seokjo KimDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Michael AlexanderDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.ORCID 0000-0001-6271-3426
Peter H S SpornDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.ORCID 0000-0002-1006-9437
Alexander V MisharinDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
G R Scott BudingerDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.ORCID 0000-0002-3114-5208
Anna P LamDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.
Monique HinchcliffDepartment of Internal Medicine, Section of Rheumatology, Allergy, and Immunology, Yale School of Medicine, New Haven, Connecticut.
Cara J GottardiDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.ORCID 0000-0003-0912-7617
Deborah R WinterDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois and.ORCID 0000-0003-1806-673X
Northwestern University · USYale University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Northwestern University Clinical and Translational Science Institute (NUCATS)UL1TR001422 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI D'AQUILA, RICHARD · 2015 to 2023
$56.8M
Tissue resident macrophages regulate proteostasis in the aging lungP01AG049665 · NIA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GR Scott Budinger · 2015 to 2026
$26.9M
Lung transplant injury drives chronic lung allograft dysfunction via recruitment ofmonocyte-derived alveolar macrophagesR01HL153312 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MISHARIN, ALEXANDER · 2020 to 2023
$2.9M
Wnt-beta-catenin cross interactions in alveolar macrophages and epithelial cells in persistence of SSc-ILDR01HL134800 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GOTTARDI, CARA J · 2018 to 2021
$2.9M
Pathogenic Wnt-beta catenin target genes in macrophages and fibrosisR01AR073270 · NIAMS · YALE UNIVERSITY · PI HINCHCLIFF, MONIQUE EVANGELINE · 2019 to 2023
$2.6M
Nikon Super-Resolution Structured Illumination Microscope (SIM)S10OD016342 · OD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHEW, TENG-LEONG · 2013 to 2013
$600k
Andor Revolution XD Live Cell Imaging System with Photomanipulation LaserS10RR031680 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GELFAND, VLADIMIR I · 2011 to 2011
$437k
Single-Cell Transcriptomic Analysis to Identify Drivers of Pulmonary FibrosisK08HL146943 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI REYFMAN, PAUL A · 2020 to 2021
$326k
CSRD VA I01 CX002350NCATS NIH HHS UL1 TR001422NCATS NIH HHS UL1 TR001863NCI NIH HHS P30 CA060553NCRR NIH HHS S10 RR031680NHLBI NIH HHS K08 HL146943NHLBI NIH HHS R01 HL134800NHLBI NIH HHS R01HL134800NHLBI NIH HHS R01 HL153312NIAMS NIH HHS R01 AR073270NIAMS NIH HHS R01AR073270NIA NIH HHS P01 AG049665NIH HHS S10 OD016342
6 · The paper itself

Abstract

Tissue availability remains an important limitation of single-cell genomic technologies for investigating cellular heterogeneity in human health and disease. BAL represents a minimally invasive approach to assessing an individual's lung cellular environment for diagnosis and research. However, the lack of high-quality, healthy lung reference data is a major obstacle to using single-cell approaches to study a plethora of lung diseases. Here, we performed single-cell RNA sequencing on over 40,000 cells isolated from the BAL of four healthy volunteers. Of the six cell types or lineages we identified, macrophages were consistently the most numerous across individuals. Our analysis confirmed the expression of marker genes defining cell types despite background signals because of the ambient RNA found in many single-cell studies. We assessed the variability of gene expression across macrophages and defined a distinct subpopulation of cells expressing a set of genes associated with Macrophage Inflammatory Protein 1 (MIP-1). RNA

Indexed as

Macrophage Inflammatory ProteinsMacrophagesBronchoalveolar Lavage FluidHealthy VolunteersHumansRNAMacrophage Inflammatory ProteinsRNABALgenomicsheterogeneitylung immunologymacrophage

Identifiers

PMID36174229
PMCPMC9986555
OpenAlexW4297963682

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.