Evidence map›Paper›PMID 36173986›Full record

ArticlePloS one2022

SSNIP-seq: A simple and rapid method for isolation of single-sperm nucleic acid for high-throughput sequencing.

Stevan Novakovic, Vanessa Tsui, Tim Semple, Luciano Martelotto, Davis J McCarthy, Wayne Crismani

Abstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Cell genomics · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Stevan NovakovicDNA Repair and Recombination Laboratory, St Vincent's Institute of Medical Research, Melbourne, Victoria, Australia.
Vanessa TsuiDNA Repair and Recombination Laboratory, St Vincent's Institute of Medical Research, Melbourne, Victoria, Australia.
Tim SempleSingle Cell Innovation Laboratory, Centre for Cancer Research, The University of Melbourne, Melbourne, Victoria, Australia.
Luciano MartelottoSingle Cell Innovation Laboratory, Centre for Cancer Research, The University of Melbourne, Melbourne, Victoria, Australia.
Davis J McCarthyBioinformatics and Cellular Genomics, St. Vincent's Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0000-0002-2218-6833
Wayne CrismaniDNA Repair and Recombination Laboratory, St Vincent's Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0000-0003-0143-8293

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We developed a simple and reliable method for the isolation of haploid nuclei from fresh and frozen testes. The described protocol uses readily available reagents in combination with flow cytometry to separate haploid and diploid nuclei. The protocol can be completed within 1 hour and the resulting individual haploid nuclei have intact morphology. The isolated nuclei are suitable for library preparation for high-throughput DNA and RNA sequencing using bulk or single nuclei. The protocol was optimised with mouse testes and we anticipate that it can be applied for the isolation of mature sperm from other mammals including humans.

Indexed as

Nucleic AcidsAnimalsGene LibraryHigh-Throughput Nucleotide SequencingHumansMaleMammalsMiceSemenSpermatozoaNucleic Acids

Identifiers

PMID36173986
PMCPMC9521801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.