Evidence map›Paper›PMID 36173614›Full record

ArticleJournal of proteome research2023

compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets.

Rob Marissen, Madhushri S Varunjikar, Jeroen F J Laros, Josef D Rasinger, Benjamin A Neely, Magnus Palmblad

Abstract read
In one paragraph

Article in Journal of proteome research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Shotgun Proteomics Protocol for Insects.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rob MarissenCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.ORCID 0000-0002-1220-9173
Madhushri S VarunjikarInstitute of Marine Research, P.O. Box 1870 Nordnes, 5817 Bergen, Norway.ORCID 0000-0001-9011-5642
Jeroen F J LarosNational Institute for Public Health and the Environment, 3720 BA Bilthoven, The Netherlands.
Josef D RasingerInstitute of Marine Research, P.O. Box 1870 Nordnes, 5817 Bergen, Norway.
Benjamin A NeelyNational Institute of Standards and Technology, Charleston, South Carolina 29412, United States.ORCID 0000-0001-6120-7695
Magnus PalmbladCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.ORCID 0000-0002-5865-8994

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has long been known that biological species can be identified from mass spectrometry data alone. Ten years ago, we described a method and software tool, compareMS2, for calculating a distance between sets of tandem mass spectra, as routinely collected in proteomics. This method has seen use in species identification and mixture characterization in food and feed products, as well as other applications. Here, we present the first major update of this software, including a new metric, a graphical user interface and additional functionality. The data have been deposited to ProteomeXchange with dataset identifier PXD034932.

Indexed as

SoftwareTandem Mass SpectrometryAlgorithmsProteomicscompareMS2distance metricmolecular phylogeneticsquality controltandem mass spectrometry

Identifiers

PMID36173614
PMCPMC9903320

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.