Evidence map›Paper›PMID 36173188›Full record

ArticleJournal of the American Society for Mass Spectrometry2022

Apodization Specific Fitting for Improved Resolution, Charge Measurement, and Data Analysis Speed in Charge Detection Mass Spectrometry.

Zachary M Miller, Conner C Harper, Hyuncheol Lee, Amanda J Bischoff, Matthew B Francis, David V Schaffer, Evan R Williams

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

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  12. Exosome Mediated Cell-Cell Crosstalk in Tissue Injury and Repair.Results and problems in cell differentiation · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zachary M MillerCollege of Chemistry, University of California, Berkeley, California 94720-1460, United States.
Conner C HarperCollege of Chemistry, University of California, Berkeley, California 94720-1460, United States.
Hyuncheol LeeCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, California 94720-1460, United States.
Amanda J BischoffCollege of Chemistry, University of California, Berkeley, California 94720-1460, United States.ORCID 0000-0003-0802-275X
Matthew B FrancisCollege of Chemistry, University of California, Berkeley, California 94720-1460, United States.ORCID 0000-0003-2837-2538
David V SchafferCollege of Chemistry, University of California, Berkeley, California 94720-1460, United States.ORCID 0000-0002-9625-0121
Evan R WilliamsCollege of Chemistry, University of California, Berkeley, California 94720-1460, United States.ORCID 0000-0002-1733-3018
QB3 · USUniversity of California, Berkeley · US

Funding

Univ of Calif Berkeley Chemistry-Biology Interface ProgramT32GM066698 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CHANG, CHRISTOPHER J., FRANCIS, MATTHEW B · 2004 to 2023
$7.5M
Multiplexed Charge Detection Mass Spectrometer for Extended Mass and Collisional Cross Section MeasurementsR01GM139338 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Evan R Williams · 2020 to 2026
$2.9M
NIGMS NIH HHS R01 GM139338NIGMS NIH HHS T32 GM066698
6 · The paper itself

Abstract

Short-time Fourier transforms with short segment lengths are typically used to analyze single ion charge detection mass spectrometry (CDMS) data either to overcome effects of frequency shifts that may occur during the trapping period or to more precisely determine the time at which an ion changes mass or charge, or enters an unstable orbit. The short segment lengths can lead to scalloping loss unless a large number of zero-fills are used, making computational time a significant factor in real-time analysis of data. Apodization specific fitting leads to a 9-fold reduction in computation time compared to zero-filling to a similar extent of accuracy. This makes possible real-time data analysis using a standard desktop computer. Rectangular apodization leads to higher resolution than the more commonly used Gaussian or Hann apodization and makes it possible to separate ions with similar frequencies, a significant advantage for experiments in which the masses of many individual ions are measured simultaneously. Equally important is a >20% increase in S/N obtained with rectangular apodization compared to Gaussian or Hann, which directly translates to a corresponding improvement in accuracy of both charge measurements and ion energy measurements that rely on the amplitudes of the fundamental and harmonic frequencies. Combined with computing the fast Fourier transform in a lower-level language, this fitting procedure eliminates computational barriers and should enable real-time processing of CDMS data on a laptop computer.

Indexed as

Data AnalysisFourier AnalysisIonsMass SpectrometryIons

Identifiers

PMID36173188
PMCPMC10389282
OpenAlexW4297965467

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.