Evidence map›Paper›PMID 36173166›Full record

ArticleProtein science : a publication of the Protein Society2022

Expanding the eukaryotic genetic code with a biosynthesized 21st amino acid.

Kuan-Lin Wu, Joshua A Moore, Mitchell D Miller, Yuda Chen, Catherine Lee, Weijun Xu, Zane Peng, Qinghui Duan, George N Phillips, Rosa A Uribe and 1 more

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 27 citations in OpenAlex.

  1. Phage-assisted continuous evolution of enzymes for noncanonical tyrosine biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Context-Dependent Chemoselectivity of Aromatic C-Methyltransferases.Chembiochem : a European journal of chemical biology · 2026
    Article
  5. Article
  6. In Vivo Biosynthesis and Direct Incorporation of Noncanonical Amino Acids into Proteins.Chembiochem : a European journal of chemical biology · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Kuan-Lin WuDepartment of Chemistry, Rice University, Houston, Texas, USA.ORCID 0000-0003-4691-7706
Joshua A MooreDepartment of Biosciences, Rice University, Houston, Texas, USA.ORCID 0000-0001-7879-0135
Mitchell D MillerDepartment of Biosciences, Rice University, Houston, Texas, USA.ORCID 0000-0003-1626-4943
Yuda ChenDepartment of Chemistry, Rice University, Houston, Texas, USA.ORCID 0000-0002-5399-1720
Catherine LeeDepartment of Chemistry, Rice University, Houston, Texas, USA.
Weijun XuDepartment of Biosciences, Rice University, Houston, Texas, USA.ORCID 0000-0002-0553-9908
Zane PengDepartment of Chemistry, Rice University, Houston, Texas, USA.
Qinghui DuanDepartment of Chemistry, Rice University, Houston, Texas, USA.ORCID 0000-0001-6457-9777
George N PhillipsDepartment of Chemistry, Rice University, Houston, Texas, USA.ORCID 0000-0002-4171-4603
Rosa A UribeDepartment of Biosciences, Rice University, Houston, Texas, USA.ORCID 0000-0002-0427-4493
Han XiaoDepartment of Chemistry, Rice University, Houston, Texas, USA.ORCID 0000-0002-4311-971X
Rice University · US

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Martin Fuchs · 2019 to 2026
$38.6M
User Training & OutreachP30GM138396 · NIGMS · UCHICAGO ARGONNE, LLC · PI JANET L. SMITH · 2020 to 2026
$34.3M
Targeting Siglec-9/Sialoglycan Interactions to Enhance NK Functions During HIV InfectionR01AI165079 · NIAID · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED, XIAO, HAN · 2021 to 2025
$3.1M
Engineering Proteins with Noncanonical Amino AcidsR35GM133706 · NIGMS · RICE UNIVERSITY · PI Han Xiao · 2019 to 2026
$2.9M
Studies to understand and exploit 10-membered enediyne biosynthesisR01CA217255 · NCI · UNIVERSITY OF KENTUCKY · PI PHILLIPS, GEORGE NEAL, THORSON, JON SCOTT · 2017 to 2021
$2.6M
Platform technologies for understanding and exploiting methylationR01GM115261 · NIGMS · UNIVERSITY OF KENTUCKY · PI PHILLIPS, GEORGE NEAL, THORSON, JON SCOTT · 2016 to 2019
$2.2M
Genetic and extrinsic mechanisms governing early enteric nervous system developmentR01DK124804 · NIDDK · RICE UNIVERSITY · PI URIBE, ROSA A · 2021 to 2025
$1.9M
Development of Bone-Targeting Antibodies for Ewing Sarcoma Using Genetic Code ExpansionR21CA255894 · NCI · RICE UNIVERSITY · PI XIAO, HAN, YUSTEIN, JASON · 2021 to 2023
$568k
Defining the functional role of Bone Morphogenic Protein Signaling Pathway in the formation of the enteric nervous systemF31HD104474 · NICHD · RICE UNIVERSITY · PI MOORE, JOSHUA A · 2020 to 2023
$164k
NCI NIH HHS R01 CA217255NCI NIH HHS R01-CA217255NCI NIH HHS R21 CA255894NCI NIH HHS R21-CA255894NIAID NIH HHS R01 AI165079NICHD NIH HHS F31 HD104474NIDDK NIH HHS R01 DK124804NIGMS NIH HHS P30 GM133893NIGMS NIH HHS P30GM133893NIGMS NIH HHS P30 GM138396NIGMS NIH HHS P30GM138396NIGMS NIH HHS R01 GM115261NIGMS NIH HHS R01-GM115261NIGMS NIH HHS R35 GM133706NIGMS NIH HHS R35-GM133706NIMHD NIH HHS F31-HD104474
6 · The paper itself

Abstract

Genetic code expansion technology allows for the use of noncanonical amino acids (ncAAs) to create semisynthetic organisms for both biochemical and biomedical applications. However, exogenous feeding of chemically synthesized ncAAs at high concentrations is required to compensate for the inefficient cellular uptake and incorporation of these components into proteins, especially in the case of eukaryotic cells and multicellular organisms. To generate organisms capable of autonomously biosynthesizing an ncAA and incorporating it into proteins, we have engineered a metabolic pathway for the synthesis of O-methyltyrosine (OMeY). Specifically, we endowed organisms with a marformycins biosynthetic pathway-derived methyltransferase that efficiently converts tyrosine to OMeY in the presence of the co-factor S-adenosylmethionine. The resulting cells can produce and site-specifically incorporate OMeY into proteins at much higher levels than cells exogenously fed OMeY. To understand the structural basis for the substrate selectivity of the transferase, we solved the X-ray crystal structures of the ligand-free and tyrosine-bound enzymes. Most importantly, we have extended this OMeY biosynthetic system to both mammalian cells and the zebrafish model to enhance the utility of genetic code expansion. The creation of autonomous eukaryotes using a 21st amino acid will make genetic code expansion technology more applicable to multicellular organisms, providing valuable vertebrate models for biological and biomedical research.

Indexed as

Amino AcidsAmino Acyl-tRNA SynthetasesAnimalsEukaryotaEukaryotic CellsGenetic CodeMammalsMethyltransferasesProteinsS-AdenosylmethionineTransferasesTyrosineZebrafishAmino AcidsAmino Acyl-tRNA SynthetasesMethyltransferasesProteinsS-AdenosylmethionineTransferasesTyrosinebiosynthesiscell engineeringgenetic code expansionmetabolic engineeringnoncanonical amino acidsite-specific incorporationunnatural amino acid

Identifiers

PMID36173166
PMCPMC9601876
OpenAlexW4297473688

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.