Evidence map›Paper›PMID 36171563›Full record

ArticleBMC microbiology2022

Isophthalate:coenzyme A ligase initiates anaerobic degradation of xenobiotic isophthalate.

Madan Junghare, Jasmin Frey, Khalid M Naji, Dieter Spiteller, Gustav Vaaje-Kolstad, Bernhard Schink

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Madan JunghareGeneral Microbiology and Microbial Ecology, Department of Biology, University of Konstanz, D-78457, Constance, Germany. madan.junghare@nmbu.no.
Jasmin FreyGeneral Microbiology and Microbial Ecology, Department of Biology, University of Konstanz, D-78457, Constance, Germany.
Khalid M NajiChemical Ecology and Biological Chemistry, Department of Biology, University of Konstanz, D-78457, Constance, Germany.
Dieter SpitellerChemical Ecology and Biological Chemistry, Department of Biology, University of Konstanz, D-78457, Constance, Germany.
Gustav Vaaje-KolstadFaculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1430, Ås, Norway.
Bernhard SchinkGeneral Microbiology and Microbial Ecology, Department of Biology, University of Konstanz, D-78457, Constance, Germany.
University of Konstanz · DENorwegian University of Life Sciences · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEnvironmental contamination from synthetic plastics and their additives is a widespread problem. Phthalate esters are a class of refractory synthetic organic compounds which are widely used in plastics, coatings, and for several industrial applications such as packaging, pharmaceuticals, and/or paints. They are released into the environment during production, use and disposal, and some of them are potential mutagens and carcinogens. Isophthalate (1,3-benzenedicarboxylic acid) is a synthetic chemical that is globally produced at a million-ton scale for industrial applications and is considered a priority pollutant. Here we describe the biochemical characterization of an enzyme involved in anaerobic degradation of isophthalate by the syntrophically fermenting bacterium Syntrophorhabdus aromaticivorans strain UI that activate isophthalate to isophthalyl-CoA followed by its decarboxylation to benzoyl-CoA.

resultsIsophthalate:Coenzyme A ligase (IPCL, AMP-forming) that activates isophthalate to isophthalyl-CoA was heterologously expressed in E. coli (49.6 kDa) for biochemical characterization. IPCL is homologous to phenylacetate-CoA ligase that belongs to the family of ligases that form carbon-sulfur bonds. In the presence of coenzyme A, Mg

conclusionWe have successfully cloned the ipcl gene, expressed and characterized the corresponding IPCL enzyme, which plays a key role in isophthalate activation that initiates its activation and further degradation by S. aromaticivorans. Its biochemical characterization represents an important step in the elucidation of the complete degradation pathway of isophthalate.

Indexed as

DiphosphatesEnvironmental PollutantsAcetyl Coenzyme AAdenosine MonophosphateAdenosine TriphosphateAnaerobiosisBase CompositionBenzoatesCarbonCarcinogensCoenzyme ACoenzyme A LigasesEscherichia coliGlutaratesHydroxybenzoatesMutagensAcetyl Coenzyme AAdenosine MonophosphateAdenosine TriphosphateBenzoatesCarbonCarcinogensCoenzyme ACoenzyme A LigasesDiphosphatesEnvironmental PollutantsGlutaratesHydroxybenzoatesisophthalateMutagensOxygenPhenylacetatesphthalic acidPhthalic AcidsPlasticsRNA, Ribosomal, 16SSulfurXenobioticsBiodegradationCoA ligasePhthalatePlasticizers

Identifiers

PMID36171563
PMCPMC9516798
OpenAlexW4297474668

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.