Evidence map›Paper›PMID 36171426›Full record

ArticleNature neuroscience2022

Developmental dynamics of RNA translation in the human brain.

Erin E Duffy, Benjamin Finander, GiHun Choi, Ava C Carter, Iva Pritisanac, Aqsa Alam, Victor Luria, Amir Karger, William Phu, Maxwell A Sherman and 15 more

Open access · greenAbstract read
In one paragraph

Article in Nature neuroscience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 93 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Functional Testing of Microproteins in a Vertebrate Model of Development.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 3 countries.

Erin E DuffyDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA. erin_duffylacy@hms.harvard.edu.ORCID http://orcid.org/0000-0002-7519-5098
Benjamin FinanderDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-8095-6066
GiHun ChoiDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-9217-2296
Ava C CarterDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA.
Iva PritisanacDepartment of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada.
Aqsa AlamDepartment of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada.
Victor LuriaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.
Amir KargerIT-Research Computing, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4561-3850
William PhuDepartment of Pediatrics, Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA.
Maxwell A ShermanComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5297-9252
Elena G AssadDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA.
Naomi PajarilloDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA.
Alexandra KhitunDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.
Elizabeth E CrouchDepartment of Pediatrics, University of California, San Francisco, San Francisco, CA, USA.
Sanika GaneshDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA.
Jin ChenCecil H. and Ida Green Center for Reproductive Biology Sciences, UT Southwestern Medical Center, Dallas, TX, USA.
Bonnie BergerComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Nenad SestanDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-0966-9619
Anne O'Donnell-LuriaDepartment of Pediatrics, Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0001-6418-9592
Eric J HuangDepartment of Pathology, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-5381-3801
Eric C GriffithDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-0428-3215
Julie D Forman-KayProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0001-8265-972X
Alan M MosesDepartment of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada.
Brian T KalishDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA. brian.kalish@sickkids.ca.ORCID http://orcid.org/0000-0003-3235-6856
Michael E GreenbergDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA. michael_greenberg@hms.harvard.edu.ORCID http://orcid.org/0000-0003-1380-2160
Harvard University · USUniversity of Toronto · CABroad Institute · USMassachusetts Institute of Technology · USUniversity of California, San Francisco · USBoston Children's Hospital · USMassachusetts Mental Health Center · USSouthwestern Medical Center · USYale University · US

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
Regulation of Cellular Pathwaysin Human Brain DevelopmentP01NS083513 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALVAREZ-BUYLLA, ARTURO · 2014 to 2024
$12.6M
Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SCOTT Loren POMEROY, MUSTAFA SAHIN · 2021 to 2026
$9.4M
Super-Resolution ImagingP30NS072030 · NINDS · HARVARD MEDICAL SCHOOL · PI REGEHR, WADE G · 2011 to 2020
$5.8M
Mechanisms Underlying Neuronal Enhancer Specification During Postnatal CNS DevelopmentR01NS115965 · NINDS · HARVARD MEDICAL SCHOOL · PI GREENBERG, MICHAEL ELDON · 2020 to 2024
$3.2M
Identification of Genetic and Molecular Bases of Derived Phenotypes in Primate Brain DevelopmentR01HG010898 · NHGRI · YALE UNIVERSITY · PI SANTPERE BARO, GABRIEL, SESTAN, NENAD · 2020 to 2023
$2.2M
Activity-Dependent Regulation of the Neuronal EpigenomeK08NS112338 · NINDS · HARVARD MEDICAL SCHOOL · PI KALISH, BRIAN · 2020 to 2020
$196k
Exploring the role of genetic structural variation in neuropsychiatric diseasesF31MH124393 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHERMAN, MAXWELL AARON · 2020 to 2022
$109k
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG010898NHGRI NIH HHS UM1 HG008900NICHD NIH HHS P50 HD105351NIMH NIH HHS F31 MH124393NINDS NIH HHS K08 NS112338NINDS NIH HHS P01 NS083513NINDS NIH HHS P30 NS072030NINDS NIH HHS R01 NS115965
6 · The paper itself

Abstract

The precise regulation of gene expression is fundamental to neurodevelopment, plasticity and cognitive function. Although several studies have profiled transcription in the developing human brain, there is a gap in understanding of accompanying translational regulation. In this study, we performed ribosome profiling on 73 human prenatal and adult cortex samples. We characterized the translational regulation of annotated open reading frames (ORFs) and identified thousands of previously unknown translation events, including small ORFs that give rise to human-specific and/or brain-specific microproteins, many of which we independently verified using proteomics. Ribosome profiling in stem-cell-derived human neuronal cultures corroborated these findings and revealed that several neuronal activity-induced non-coding RNAs encode previously undescribed microproteins. Physicochemical analysis of brain microproteins identified a class of proteins that contain arginine-glycine-glycine (RGG) repeats and, thus, may be regulators of RNA metabolism. This resource expands the known translational landscape of the human brain and illuminates previously unknown brain-specific protein products.

Indexed as

Gene Expression RegulationProtein BiosynthesisAdultArginineBrainGlycineHumansRNA, MessengerArginineGlycineRNA, Messenger

Identifiers

PMID36171426
PMCPMC10198132
OpenAlexW4297497806

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.