Evidence map›Paper›PMID 36169569›Full record

ArticleMemorias do Instituto Oswaldo Cruz2022

Analysis of a novel class A β-lactamase OKP-B-6 of Klebsiella quasipneumoniae: structural characterisation and interaction with commercially available drugs.

Reinaldo Bellini, Isabella Alvim Guedes, Luciane Prioli Ciapina, Ana Tereza Ribeiro de Vasconcelos, Laurent Emmanuel Dardenne, Marisa Fabiana Nicolás

Open access · diamondAbstract read
In one paragraph

Article in Memorias do Instituto Oswaldo Cruz, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 69% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Reinaldo BelliniLaboratório Nacional de Computação Científica, Petrópolis, RJ, Brasil.
Isabella Alvim GuedesLaboratório Nacional de Computação Científica, Petrópolis, RJ, Brasil.
Luciane Prioli CiapinaLaboratório Nacional de Computação Científica, Petrópolis, RJ, Brasil.
Ana Tereza Ribeiro de VasconcelosLaboratório Nacional de Computação Científica, Petrópolis, RJ, Brasil.
Laurent Emmanuel DardenneLaboratório Nacional de Computação Científica, Petrópolis, RJ, Brasil.ORCID http://orcid.org/0000-0001-8518-8062
Marisa Fabiana NicolásLaboratório Nacional de Computação Científica, Petrópolis, RJ, Brasil.ORCID http://orcid.org/0000-0002-5437-2737
Laboratório Nacional de Computação Científica · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGram-negative and Gram-positive bacteria produce beta-lactamase as factors to overcome beta-lactam antibiotics, causing their hydrolysis and impaired antimicrobial action. Class A beta-lactamase contains the chromosomal sulfhydryl reagent variable (SHV, point mutation variants of SHV-1), LEN (Klebsiella pneumoniae strain LEN-1), and other K. pneumoniae beta-lactamase (OKP) found mostly in Klebsiella's phylogroups. The SHV known as extended-spectrum β-lactamase can inactivate most beta-lactam antibiotics. Class A also includes the worrisome plasmid-encoded Klebsiella pneumoniae carbapenemase (KPC-2), a carbapenemase that can inactivate most beta-lactam antibiotics, carbapenems, and some beta-lactamase inhibitors.

objectivesSo far, there is no 3D crystal structure for OKP-B, so our goal was to perform structural characterisation and molecular docking studies of this new enzyme.

methodsWe applied a homology modelling method to build the OKP-B-6 structure, which was compared with SHV-1 and KPC-2 according to their electrostatic potentials at the active site. Using the DockThor-VS, we performed molecular docking of the SHV-1 inhibitors commercially available as sulbactam, tazobactam, and avibactam against the constructed model of OKP-B-6.

findingsFrom the point of view of enzyme inhibition, our results indicate that OKP-B-6 should be an extended-spectrum beta-lactamase (ESBL) susceptible to the same drugs as SHV-1. MAIN

conclusionsThis conclusion advantageously impacts the clinical control of the bacterial pathogens encoding OKP-B in their genome by using any effective, broad-spectrum, and multitarget inhibitor against SHV-containing bacteria.

Indexed as

beta-Lactamase InhibitorsSulbactamAnti-Bacterial Agentsbeta-LactamasesCarbapenemsKlebsiellaKlebsiella pneumoniaeMicrobial Sensitivity TestsMolecular Docking SimulationSulfhydryl ReagentsTazobactamAnti-Bacterial Agentsbeta-Lactamase Inhibitorsbeta-LactamasesCarbapenemsSulbactamSulfhydryl ReagentsTazobactam

Identifiers

PMID36169569
PMCPMC9506704
OpenAlexW4296842918

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.