Evidence map›Paper›PMID 36168919›Full record

ArticleMolecular plant pathology2023

Molecular characterization reveals no functional evidence for naturally occurring cross-kingdom RNA interference in the early stages of Botrytis cinerea-tomato interaction.

Si Qin, Javier Veloso, Mirna Baak, Britt Boogmans, Tim Bosman, Guido Puccetti, Xiaoqian Shi-Kunne, Sandra Smit, Robert Grant-Downton, Thomas Leisen and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. RNA Interference in Fungal Plant Pathogens: What Do We Know fromJournal of fungi (Basel, Switzerland) · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Genome Comparisons betweenJournal of fungi (Basel, Switzerland) · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. RNA-Based Control of Fungal Pathogens in Plants.International journal of molecular sciences · 2023
    Review
  16. Interactions and Insertion ofInternational journal of molecular sciences · 2023
    Article
  17. Article
  18. Corrigendum.Molecular plant pathology · 2023
    Article
  19. Article
  20. Fungal biotechnology: From yesterday to tomorrow.Frontiers in fungal biology · 2023
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 5 countries.

Si QinLaboratory of Phytopathology, Wageningen University, Wageningen, Netherlands.
Javier VelosoLaboratory of Phytopathology, Wageningen University, Wageningen, Netherlands.
Mirna BaakBioinformatics Group, Wageningen University, Wageningen, Netherlands.
Britt BoogmansLaboratory of Phytopathology, Wageningen University, Wageningen, Netherlands.
Tim BosmanLaboratory of Phytopathology, Wageningen University, Wageningen, Netherlands.
Guido PuccettiLaboratory of Phytopathology, Wageningen University, Wageningen, Netherlands.
Xiaoqian Shi-KunneLaboratory of Phytopathology, Wageningen University, Wageningen, Netherlands.
Sandra SmitBioinformatics Group, Wageningen University, Wageningen, Netherlands.
Robert Grant-DowntonSt Peter's College, University of Oxford, Oxford, UK.
Thomas LeisenDepartment of Biology, University of Kaiserslautern, Kaiserslautern, Germany.
Matthias HahnDepartment of Biology, University of Kaiserslautern, Kaiserslautern, Germany.
Jan A L van KanLaboratory of Phytopathology, Wageningen University, Wageningen, Netherlands.ORCID https://orcid.org/0000-0003-3563-1550
Wageningen University & Research · NLUniversity of Kaiserslautern · DESaint Peter's University · USUniversidade da Coruña · ES

Funding

China Scholarship Council
6 · The paper itself

Abstract

Plant immune responses are triggered during the interaction with pathogens. The fungus Botrytis cinerea has previously been reported to use small RNAs (sRNAs) as effector molecules capable of interfering with the host immune response. Conversely, a host plant produces sRNAs that may interfere with the infection mechanism of an intruder. We used high-throughput sequencing to identify sRNAs produced by B. cinerea and Solanum lycopersicum (tomato) during early phases of interaction and to examine the expression of their predicted mRNA targets in the other organism. A total of 7042 B. cinerea sRNAs were predicted to target 3185 mRNAs in tomato. Of the predicted tomato target genes, 163 were indeed transcriptionally down-regulated during the early phase of infection. Several experiments were performed to study a causal relation between the production of B. cinerea sRNAs and the down-regulation of predicted target genes in tomato. We generated B. cinerea mutants in which a transposon region was deleted that is the source of c.10% of the fungal sRNAs. Furthermore, mutants were generated in which both Dicer-like genes (Bcdcl1 and Bcdcl2) were deleted and these displayed a >99% reduction of transposon-derived sRNA production. Neither of these mutants was significantly reduced in virulence on any plant species tested. Our results reveal no evidence for any detectable role of B. cinerea sRNAs in the virulence of the fungus.

Indexed as

Solanum lycopersicumBotrytisGene Expression Regulation, PlantPlant DiseasesRNA InterferenceRNA, MessengerRNA, MessengerBotrytis cinereahigh-throughput sequencinghost immunitysmall RNAtomato

Identifiers

PMID36168919
PMCPMC9742496
OpenAlexW4297458109

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.