Evidence map›Paper›PMID 36166480›Full record

ArticlePLoS genetics2022

A genome-wide CRISPR screen identifies DPM1 as a modifier of DPAGT1 deficiency and ER stress.

Hans M Dalton, Raghuvir Viswanatha, Roderick Brathwaite, Jae Sophia Zuno, Alexys R Berman, Rebekah Rushforth, Stephanie E Mohr, Norbert Perrimon, Clement Y Chow

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hans M DaltonDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah, United States of America.
Raghuvir ViswanathaDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, United States of America.
Roderick BrathwaiteDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0002-1304-856X
Jae Sophia ZunoDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah, United States of America.
Alexys R BermanDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah, United States of America.
Rebekah RushforthDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah, United States of America.
Stephanie E MohrDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, United States of America.
Norbert PerrimonDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, United States of America.
Clement Y ChowDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah, United States of America.ORCID 0000-0002-3104-7923
University of Utah · USHarvard University · USHoward Hughes Medical Institute · US

Funding

Functional genomics resources for the Drosophila - TR&D3P41GM132087 · NIGMS · HARVARD MEDICAL SCHOOL · PI ZIRIN, JONATHAN D · 2019 to 2023
$6.8M
Investigating the impact of genetic variation on the ER stress response, protein folding, and diseaseR35GM124780 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Clement Chow · 2017 to 2026
$4.0M
Characterization and Contextualization of Modifier Genes Affecting ER StressF32GM136057 · NIGMS · UNIVERSITY OF UTAH · PI DALTON, HANS MARTIN · 2020 to 2022
$201k
NIGMS NIH HHS F32 GM136057NIGMS NIH HHS P41 GM132087NIGMS NIH HHS R35 GM124780
6 · The paper itself

Abstract

Partial loss-of-function mutations in glycosylation pathways underlie a set of rare diseases called Congenital Disorders of Glycosylation (CDGs). In particular, DPAGT1-CDG is caused by mutations in the gene encoding the first step in N-glycosylation, DPAGT1, and this disorder currently lacks effective therapies. To identify potential therapeutic targets for DPAGT1-CDG, we performed CRISPR knockout screens in Drosophila cells for genes associated with better survival and glycoprotein levels under DPAGT1 inhibition. We identified hundreds of candidate genes that may be of therapeutic benefit. Intriguingly, inhibition of the mannosyltransferase Dpm1, or its downstream glycosylation pathways, could rescue two in vivo models of DPAGT1 inhibition and ER stress, even though impairment of these pathways alone usually causes CDGs. While both in vivo models ostensibly cause cellular stress (through DPAGT1 inhibition or a misfolded protein), we found a novel difference in fructose metabolism that may indicate glycolysis as a modulator of DPAGT1-CDG. Our results provide new therapeutic targets for DPAGT1-CDG, include the unique finding of Dpm1-related pathways rescuing DPAGT1 inhibition, and reveal a novel interaction between fructose metabolism and ER stress.

Indexed as

Congenital Disorders of GlycosylationMannosyltransferasesClustered Regularly Interspaced Short Palindromic RepeatsFructoseGenomeGlycoproteinsHumansN-Acetylglucosaminyltransferasesdolichyl-phosphate alpha-N-acetylglucosaminyltransferaseFructoseGlycoproteinsMannosyltransferasesN-Acetylglucosaminyltransferases

Identifiers

PMID36166480
PMCPMC9543880
OpenAlexW4297255155

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.