Evidence map›Paper›PMID 36165439›Full record

ArticleeLife2022

Resurrecting essential amino acid biosynthesis in mammalian cells.

Julie Trolle, Ross M McBee, Andrew Kaufman, Sudarshan Pinglay, Henri Berger, Sergei German, Liyuan Liu, Michael J Shen, Xinyi Guo, J Andrew Martin and 4 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Article
  7. Article
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  9. Multi-scale design and optimization of antibody production via flexible nets.Computational and structural biotechnology journal · 2025
    Article
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  11. Synthetic genomes unveil the effects of synonymous recoding.bioRxiv : the preprint server for biology · 2024
    Article
  12. The Metabolic Syndrome, a Human Disease.International journal of molecular sciences · 2024
    Review
  13. Article
  14. Synthesis ofOrganic & biomolecular chemistry · 2023
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Julie Trolle *Institute for Systems Genetics, Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, United States.ORCID 0000-0002-2497-3531
Ross M McBee *Department of Biological Sciences, Columbia University, New York, United States.ORCID 0000-0003-1926-2863
Andrew KaufmanDepartment of Systems Biology, Columbia University, New York, United States.
Sudarshan PinglayInstitute for Systems Genetics, Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, United States.
Henri BergerInstitute for Systems Genetics, Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, United States.
Sergei GermanInstitute for Systems Genetics, Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, United States.
Liyuan LiuDepartment of Systems Biology, Columbia University, New York, United States.
Michael J ShenInstitute for Systems Genetics, Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, United States.
Xinyi GuoDepartment of Biology, New York University, New York, United States.
J Andrew MartinInstitute for Systems Genetics, Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, United States.
Michael E PacoldDepartment of Radiation Oncology, NYU Langone Health, New York, United States.ORCID 0000-0003-3688-2378
Drew R JonesDepartment of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, United States.
Jef D BoekeInstitute for Systems Genetics, Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, United States.ORCID 0000-0001-5322-4946
Harris H WangDepartment of Systems Biology, Columbia University, New York, United States.ORCID 0000-0003-2164-4318
Institute for Systems Biology · USColumbia University · USHinge Health · USNew York University · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Supplement for Center for Synthetic Regulatory Genomics: Building CACNA1C alleles associated with Neuropsychiatric DisordersRM1HG009491 · NHGRI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Jef D BOEKE · 2018 to 2026
$20.9M
Micron-scale Spatial Metagenomic Mapping of Microbial Biogeography in the Gastrointestinal TractR01AI132403 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Harris H Wang · 2017 to 2026
$6.0M
NCI NIH HHS P30 CA016087NHGRI NIH HHS RM1 HG009491NIAID NIH HHS R01 AI132403
6 · The paper itself

Abstract

Major genomic deletions in independent eukaryotic lineages have led to repeated ancestral loss of biosynthesis pathways for nine of the twenty canonical amino acids. While the evolutionary forces driving these polyphyletic deletion events are not well understood, the consequence is that extant metazoans are unable to produce nine essential amino acids (EAAs). Previous studies have highlighted that EAA biosynthesis tends to be more energetically costly, raising the possibility that these pathways were lost from organisms with access to abundant EAAs. It is unclear whether present-day metazoans can reaccept these pathways to resurrect biosynthetic capabilities that were lost long ago or whether evolution has rendered EAA pathways incompatible with metazoan metabolism. Here, we report progress on a large-scale synthetic genomics effort to reestablish EAA biosynthetic functionality in mammalian cells. We designed codon-optimized biosynthesis pathways based on genes mined from

Indexed as

Amino Acids, EssentialGenomeAmino AcidsAnimalsCHO CellsCricetinaeCricetulusEscherichia coliMammalsValineAmino AcidsAmino Acids, EssentialValinecell biologyCricetulus griseusessential amino acidsgeneticsgenomicssynthetic biologysynthetic genomics

Identifiers

PMID36165439
PMCPMC9560156
OpenAlexW4297265719

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.