Evidence map›Paper›PMID 36163383›Full record

ArticleNature chemical biology2022

Discovery and molecular basis of subtype-selective cyclophilin inhibitors.

Alexander A Peterson, Aziz M Rangwala, Manish K Thakur, Patrick S Ward, Christie Hung, Ian R Outhwaite, Alix I Chan, Dmitry L Usanov, Vamsi K Mootha, Markus A Seeliger and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  16. Review
  17. Review
  18. Mitochondria in health, disease, and aging.Physiological reviews · 2023
    Review
  19. Small-molecule discovery through DNA-encoded libraries.Nature reviews. Drug discovery · 2023
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Alexander A Peterson *Merkin Institute of Transformative Technologies in Healthcare, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-7674-9980
Aziz M Rangwala *Department of Pharmacological Sciences, Stony Brook University, Stony Brook, NY, USA.ORCID http://orcid.org/0000-0003-3556-7931
Manish K ThakurDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY, USA.
Patrick S WardBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-6437-8174
Christie HungMerkin Institute of Transformative Technologies in Healthcare, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-9311-9542
Ian R OuthwaiteDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY, USA.ORCID http://orcid.org/0000-0003-2037-3261
Alix I ChanMerkin Institute of Transformative Technologies in Healthcare, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-2698-4031
Dmitry L UsanovMerkin Institute of Transformative Technologies in Healthcare, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-3030-2918
Vamsi K MoothaBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Markus A SeeligerDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY, USA. markus.seeliger@stonybrook.edu.ORCID http://orcid.org/0000-0003-0990-1756
David R LiuMerkin Institute of Transformative Technologies in Healthcare, Broad Institute of MIT and Harvard, Cambridge, MA, USA. drliu@fas.harvard.edu.ORCID http://orcid.org/0000-0002-9943-7557
Broad Institute · USStony Brook University · USStony Brook Medicine · US

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
Dynamics of Ligand Binding and Protein Kinase Regulation_RenewalR35GM119437 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Markus A Seeliger · 2016 to 2026
$6.5M
Integrating Chemistry and Evolution to Illuminate Biology and Enable Novel TherapeuticsR35GM118062 · NIGMS · HARVARD UNIVERSITY · PI LIU, DAVID R · 2016 to 2025
$6.4M
Structure, function, and disease biology of MICU1/MICU2R01AR071942 · NIAMS · MASSACHUSETTS GENERAL HOSPITAL · PI Zenon Grabarek, Vamsi Krishna Mootha · 2018 to 2026
$4.1M
Continuous Evolution of Proteins with Novel Therapeutic PotentialR01EB022376 · NIBIB · HARVARD UNIVERSITY · PI LIU, DAVID R · 2016 to 2019
$1.8M
Mitochondrial redox regulation of adrenal steroidogenesisK08HL157620 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI WARD, PATRICK S. · 2021 to 2025
$864k
Elucidating the Role of Binding Kinetics in the Development of Abl Kinase Drug ResistanceF30CA260771 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI RANGWALA, AZIZ MOHAMMEDI · 2021 to 2024
$184k
Robotic assay platformS10OD028478 · OD · STATE UNIVERSITY NEW YORK STONY BROOK · PI SEELIGER, MARKUS A · 2020 to 2020
$173k
Howard Hughes Medical InstituteNCI NIH HHS F32 CA260772NHLBI NIH HHS K08 HL157620NIAMS NIH HHS R01 AR071942NIBIB NIH HHS R01 EB022376NIGMS NIH HHS P30 GM133893NIGMS NIH HHS R35 GM118062NIGMS NIH HHS R35 GM119437NIGMS NIH HHS T32 GM008444NIH HHS S10 OD028478
6 · The paper itself

Abstract

Although cyclophilins are attractive targets for probing biology and therapeutic intervention, no subtype-selective cyclophilin inhibitors have been described. We discovered novel cyclophilin inhibitors from the in vitro selection of a DNA-templated library of 256,000 drug-like macrocycles for cyclophilin D (CypD) affinity. Iterated macrocycle engineering guided by ten X-ray co-crystal structures yielded potent and selective inhibitors (half maximal inhibitory concentration (IC

Indexed as

CyclophilinsMitochondrial Permeability Transition PoreDNALysinePeptidyl-Prolyl Isomerase FCyclophilinsDNALysineMitochondrial Permeability Transition PorePeptidyl-Prolyl Isomerase F

Identifiers

PMID36163383
PMCPMC9596378
OpenAlexW4297242940

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.